Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754943.1:8861159-8872704[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00015 0.0087 16.6 2.0 1 23 375 397 375 397 0.97

2 18 3.4e-05 0.002 18.7 1.8 1 20 403 422 403 425 0.94

3 18 7.4e-05 0.0043 17.6 1.8 1 23 431 453 431 453 0.98

4 18 0.00021 0.012 16.2 4.4 1 21 459 479 459 481 0.94

5 18 2.7e-05 0.0016 19.0 4.4 1 23 487 509 487 509 0.99

6 18 3.2e-05 0.0018 18.8 5.3 1 23 515 537 515 537 0.97

7 18 9.5e-06 0.00055 20.4 7.2 1 23 543 565 543 565 0.97

8 18 1.2e-07 7.2e-06 26.4 2.7 1 23 571 593 571 593 0.98

9 18 9.2e-05 0.0053 17.3 6.7 1 23 599 621 599 621 0.97

10 18 0.00012 0.0072 16.9 4.8 1 23 627 649 627 649 0.97

11 18 4.1e-07 2.3e-05 24.7 1.9 1 23 655 677 655 677 0.98

12 18 2.6e-06 0.00015 22.2 7.8 1 23 683 705 683 705 0.98

13 18 8e-05 0.0047 17.5 8.1 1 23 711 733 711 733 0.98

14 18 2.1e-05 0.0012 19.3 7.7 1 23 739 761 739 761 0.98

15 18 1.3e-05 0.00077 20.0 7.1 1 23 767 789 767 789 0.97

16 18 4.9e-05 0.0029 18.2 0.8 1 23 795 817 795 817 0.98

17 18 0.11 6.5 7.6 5.0 1 23 827 849 827 849 0.98

18 18 3e-07 1.7e-05 25.2 1.6 1 23 855 877 855 877 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00015	0.0087	16.6	2.0	1	23	375	397	375	397	0.97
2	18	3.4e-05	0.002	18.7	1.8	1	20	403	422	403	425	0.94
3	18	7.4e-05	0.0043	17.6	1.8	1	23	431	453	431	453	0.98
4	18	0.00021	0.012	16.2	4.4	1	21	459	479	459	481	0.94
5	18	2.7e-05	0.0016	19.0	4.4	1	23	487	509	487	509	0.99
6	18	3.2e-05	0.0018	18.8	5.3	1	23	515	537	515	537	0.97
7	18	9.5e-06	0.00055	20.4	7.2	1	23	543	565	543	565	0.97
8	18	1.2e-07	7.2e-06	26.4	2.7	1	23	571	593	571	593	0.98
9	18	9.2e-05	0.0053	17.3	6.7	1	23	599	621	599	621	0.97
10	18	0.00012	0.0072	16.9	4.8	1	23	627	649	627	649	0.97
11	18	4.1e-07	2.3e-05	24.7	1.9	1	23	655	677	655	677	0.98
12	18	2.6e-06	0.00015	22.2	7.8	1	23	683	705	683	705	0.98
13	18	8e-05	0.0047	17.5	8.1	1	23	711	733	711	733	0.98
14	18	2.1e-05	0.0012	19.3	7.7	1	23	739	761	739	761	0.98
15	18	1.3e-05	0.00077	20.0	7.1	1	23	767	789	767	789	0.97
16	18	4.9e-05	0.0029	18.2	0.8	1	23	795	817	795	817	0.98
17	18	0.11	6.5	7.6	5.0	1	23	827	849	827	849	0.98
18	18	3e-07	1.7e-05	25.2	1.6	1	23	855	877	855	877	0.98

Sequence Information

Coding Sequence: ATGAATGCTGATAACCAGAACGTTCTGACCGGGGGACATAATTCTTCCAGTGCTCAGGGTCAAAGACAGCCCCCGACGACGTCCGTGCCGACCGACCTGAGGGTGAACACGACCGCCCTGAACGCGGTCGCGCTGAGCAGCAGCATCGCCAAGTACTGGGTGTTGACGAACTTCCTGCCCGGTCCGATACCGCAGGTCTCGGTGTACGGCCTGCCAGGAGCGAACAGGGAGAACCAGGGAAAGGTGGGACAAgATGGAATGCTTGGTCAACACGCAGGTCTCCTCTCGGCCGACCCGTTGCTTCTCCAACAGCACTCGCAAATCCCAGTCAGTATAGCTTCACAGGGAAACATCGGGGTTCACAGCAATTCCATACATCTAGACAACTCGCACGTTACCAATCACCATCAGAATGAAAATATCTCATCACAGAATCAAAACCAGTTACCCAGAGATATCAGAATGCCGCATCCTCAGCAACCGAGTCAATCGCAGCCTCAACAGTCCCAGCAACCTCAACACGGCAACCATTCGAACCAGCAGAACCTAGTACAAGTGCAAGTCCAGGACAATCTGGTGTCGGTCATCGAGGAGAACAAGGACCAGAAGGACATCATATCAGCTCAGCTGCAGGCCGCCCAGCTCCAGCTCAACGAGAACCAGCTGAACCAGCAGCAAGCCTTGACCGTGCAGCAGCTGCAGCATCTTCAAGTGCAACAGGTATTGGATAATGTGGACCTCAAAGGCGGCAACCTGATGGACGTGCGGACGGCGGACGGTAGCATAGTTAAGATCCAGACTAACATGCAAGAGCAAGAGTTGGTGAAGACGCTCGGCGTCGACATAGTACAAAATATGTATAAGGTTAACGTTGATGATTTGAATCAGCTTCTGGCATATCACGAAATTTTCGGGAAGCTGCAAGGCAATCAAAGTGATGTCTCCAACCAGAATGTACCACAAAACGCTTCAACCAATAGCAATAACACCAGTAGCgccaacaacaataacaacctGAACCTCCCGCCGAACAACCCGGCTCTGTCCGTGATAACGAAGGACGAGCAGGAGCCCTCCACGAGCAACGTGTCCGGCGACAACCCCTCACTAGTGCTGGGCACGCACGTCTGTGATCTCTGCGGTAAAATATTCCAGTTTCGTTACCAGTTAATAGTCCATCGACGTTACCACACGGAGCGCAAGCCGTTCACGTGTCAGGTGTGCGGGAAGGCATTCACGAACGCCCAGGAACTGACCAGGCATGGGAAGTGCCACTTGGGGGGCAGCATGTTCACGTGTACTGTGTGCTTTCACGTTTTCGCTACCGACGCATCCCTGGAGCGCCACATGAAGAGGCATTCGACTGAAAAGCCCTATGCGTGCACGACTTGCGGGAAAACGTTCGCGAGGAAGGAACATTTGGATAATCATACGAGGTGTCACACAGGGGAGACTCCTTACAGGTGCCAGTACTGCGCGAAATCTTTCACCAGGAAAGAGCACATGGTGAATCACGTCAGAAAACACACAGGCGAGACGCCGCACAGGTGCGAGATCTGCAAGAAATCCTTCACGAGAAAGGAGCACTTCATGAACCACGTGATGTGGCACACGGGCGAGACCCCGCACCACTGCACCGTTTGCGGGAAGAAGTACACCAGAAAGGAACACCTCGCCAATCACATGCGGAGCCATACGAATGATACGCCTTTCAGGTGCGAGATTTGCGGGAAGTCCTTCACGAGAAAGGAGCACTTCACAAACCATATCATGTGGCATACGGGCGAGACGCCCCACCGGTGCGACTTCTGTTCCAAGACCTTCACTAGGAAGGAACACCTGCTGAACCACGTCAGACAGCACACGGGGGAGTCCCCGCACCGGTGCGGTTTCTGCGCCAAGTCTTTCACTAGGAAAGAGCACCTCATCAATCACGTGAGGCAGCACACGGGCGAGACGCCCTTCAGGTGTAGCATATGCCCGAAGGCGTTCACGAGGAAGGATCACCTGGTCAACCACGTCAGGCAACACACGGGGGAGTCCCCGCACAAGTGTACTTACTGTACAAAGTCTTTCACGAGGAAGGAGCACCTGAACAACCACATACGGCAGCACACGGGCGAGTCTCCACACAGGTGTCACTTCTGCGCCAAGTCTTTCACTAGGAAAGAGCACCTAACGAATCACGTTCGGATACATACAGGGGAATCCCCACACCGATGCGAGTTCTGCCAGAAAACCTTCACCAGAAAAGAACACCTGACGAACCATCTAAGGCAGCACACGGGCGAAACTCCACACTGTTGTAATATTTGTTCCAAGCCCTTCACGAGGAAAGAACACTTAGTCAATCACATGCGTTCCCATACAGGCGAACGTCCTTTCTCCTGCAACGAGTGTGGGAAATCGTTCCCGTTGAAAGGCAACCTCCTGTTCCATCAACGGTCCCACAACAAGGGCGCGGCGGCAGAAAGGCCTTTTAGatgTGATCTGTGTGAAAAAGACTTCATGTGTAAAGGACATTTGGTGTCGCATAGGAGATCTCATAATGGTGATCGGCCGCACACTTGCCCCGATTGCGGGAAAACCTTTGTGGAAAAGGGAAATATGCTCAGACACATGAAGAAACATACCGTTGAAAATGGACAGgTGAATCTATCGAATCAGCCAGTGAGCCAAGTCCAGCCGCCTCCTCAGCAGCAGAGTAGCTCTCAGCAGCCTCAGTCGCAATCTAATGCGGCCAGCATTCAGATACCCCAAGTGCAGAGCGGACAGGCGCAGCAGCAAGCTCCCGCTAGTAATATGCCGCAACCCTCCCACTTATCCCTTCACCCCCCGAACAGCCATTCCGTCGTAGTGCCTACCAATAACAATGTTCTAGCTTCTTACTGA
Protein Sequence: MNADNQNVLTGGHNSSSAQGQRQPPTTSVPTDLRVNTTALNAVALSSSIAKYWVLTNFLPGPIPQVSVYGLPGANRENQGKVGQDGMLGQHAGLLSADPLLLQQHSQIPVSIASQGNIGVHSNSIHLDNSHVTNHHQNENISSQNQNQLPRDIRMPHPQQPSQSQPQQSQQPQHGNHSNQQNLVQVQVQDNLVSVIEENKDQKDIISAQLQAAQLQLNENQLNQQQALTVQQLQHLQVQQVLDNVDLKGGNLMDVRTADGSIVKIQTNMQEQELVKTLGVDIVQNMYKVNVDDLNQLLAYHEIFGKLQGNQSDVSNQNVPQNASTNSNNTSSANNNNNLNLPPNNPALSVITKDEQEPSTSNVSGDNPSLVLGTHVCDLCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELTRHGKCHLGGSMFTCTVCFHVFATDASLERHMKRHSTEKPYACTTCGKTFARKEHLDNHTRCHTGETPYRCQYCAKSFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCAKSFTRKEHLINHVRQHTGETPFRCSICPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLNNHIRQHTGESPHRCHFCAKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNICSKPFTRKEHLVNHMRSHTGERPFSCNECGKSFPLKGNLLFHQRSHNKGAAAERPFRCDLCEKDFMCKGHLVSHRRSHNGDRPHTCPDCGKTFVEKGNMLRHMKKHTVENGQVNLSNQPVSQVQPPPQQQSSSQQPQSQSNAASIQIPQVQSGQAQQQAPASNMPQPSHLSLHPPNSHSVVVPTNNNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00392044;
90% Identity: iTF_00392044;
80% Identity: -