Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.4 3.7e+02 1.4 0.1 14 26 56 68 49 70 0.76

2 7 0.00048 0.45 10.8 0.8 16 39 119 139 112 146 0.85

3 7 0.0011 1 9.6 1.0 18 40 149 168 143 171 0.91

4 7 0.00012 0.12 12.6 1.4 1 39 161 195 161 199 0.85

5 7 0.019 17 5.7 6.5 9 41 205 234 201 236 0.86

6 7 0.0052 4.8 7.5 0.2 17 40 241 261 234 264 0.86

7 7 0.37 3.4e+02 1.5 3.7 14 33 266 285 262 319 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.4	3.7e+02	1.4	0.1	14	26	56	68	49	70	0.76
2	7	0.00048	0.45	10.8	0.8	16	39	119	139	112	146	0.85
3	7	0.0011	1	9.6	1.0	18	40	149	168	143	171	0.91
4	7	0.00012	0.12	12.6	1.4	1	39	161	195	161	199	0.85
5	7	0.019	17	5.7	6.5	9	41	205	234	201	236	0.86
6	7	0.0052	4.8	7.5	0.2	17	40	241	261	234	264	0.86
7	7	0.37	3.4e+02	1.5	3.7	14	33	266	285	262	319	0.78

Coding Sequence: atgaaaatctcaaaaaaggGTATAGGCATCGACCCTTGCACCCCCGTGTCACGGCCCAAAGAAGACGATACAAGGGGGAAGAGGTTATGTGAGGGCGGAGCGGCAACACCGACGAAGCAACGCCCCCTACCACGGAACGAGGAGATTACCGATCCGATCTTGGCGTCCCGTAGGAACATCTGCCGAAAATGTAAGTCACGTTACGAGGAATTCTTGAGGTATATCGAGACGTGTAAGGCCCATGCGTCTGTAGTAGAGAAGGTACTGGCCATAAGGCAAATCAAAGACGAACCCACGGTCAATATCGTGTGTCATCCGTTAATCGAGGAAGAAATTCTAACCGTTCCTCAGTTGTCTTTTAAGTGTCTACTGTGCGACAAGGCTTATACTCGGTCTAGTAAGTTGAAGACGCATATGAGCGTCCATACGGgcgaaaggccttttaaatgcCTCGtttgtaataaggcttttacttcGAACGATaacttgaaaaggcacatgcgcttCCACACGAGGGAGAAGCCCTTCAAATGTTCCGTCTGTGATAAGAACTTCAGTGAATCCGGTagtttgaaaacgcacatgcgcctcCATACGGGGGAAAAGCCGTTTAAATGCCCGCTATgtgaaaggccttttaaatgttccctctgTAATAACGCTTTCACTACGTCTAGTCACTTAAAAAATCACATGCGCTGTCACACGGGCGAGAAACCTTTCGAATGTCCCGTCTGTAATAAGACCTTCCCTCGGTCTGATAACTTGAAAATGCACATGCGCGTCCATACGGGCGAGAAGTCTTTCAACTGTCCGGTCTGTAATAAGAGTTTCGCCCGGTCCGTTCACGTGAAGACCCACATGCGCGTCCACACGGGCGAAAGGCCCTTTCAATGTTCCGTCTGTTTTAAGGCTTTTACTTTGTCCGGGGCTCTTAagaggcacatgcgccttcacgCCGTCGACAATCCCTAA
Protein Sequence: MKISKKGIGIDPCTPVSRPKEDDTRGKRLCEGGAATPTKQRPLPRNEEITDPILASRRNICRKCKSRYEEFLRYIETCKAHASVVEKVLAIRQIKDEPTVNIVCHPLIEEEILTVPQLSFKCLLCDKAYTRSSKLKTHMSVHTGERPFKCLVCNKAFTSNDNLKRHMRFHTREKPFKCSVCDKNFSESGSLKTHMRLHTGEKPFKCPLCERPFKCSLCNNAFTTSSHLKNHMRCHTGEKPFECPVCNKTFPRSDNLKMHMRVHTGEKSFNCPVCNKSFARSVHVKTHMRVHTGERPFQCSVCFKAFTLSGALKRHMRLHAVDNP

Sequence clustering based on sequence similarity using MMseqs2