Cpri003300.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754937.1:22763848-22784027[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.1e-12 1.4e-08 34.5 0.0 1 39 450 489 450 493 0.90 2 4 5.5e-13 1.3e-09 37.8 0.1 1 39 504 542 504 545 0.95 3 4 5.7e-19 1.3e-15 57.0 0.0 1 45 559 604 559 604 0.98 4 4 6.8e-17 1.5e-13 50.4 0.0 1 40 611 651 611 655 0.92
Sequence Information
- Coding Sequence
- ATGCGAGTTTACGCGAGCGGAGATGGCGACAAAGACGGGGGGAAACGCGGAAGGTGGAGAGGAGAGGGTGAATGTGGTGTGTGGTGGTGTTTGAGAAGGAGAGAGGCGATTAGAGCGTCTCTGCTCCGAACGGCCGACCAATTAAAGATCAAAGGGTTGTGCGAATCGCCTGACGACAAAGAAAATTCCGACTCGCCCCCTCCGATTTGCGGGAAAGGTGCCGCCGTCGACGCGAACAACCACCCCTCGGCCGTCGACGCCGCCGCCACCGTCGCCGCATCGCAACCCCCTACGCCGGCCGCTACAGCCGCCGCAGAACCTGAAACCCACGAAAGGTACAAGAAGGAGATCGCCATAGAGAACTCAATAGCGGCGGAGCCCGACATTTACTCCCACAGGGACGGCGGCAACCCGAAGGCACCGAAATACCCCCGAGTGTCCTCGGAACCGGGTTCGGATGAAAGAGTGCCAGAGAGCGGCACCTGCAGCACCAACAACGCCGCCGCCAACTCCACCACCGCCACCATCAtcatcaacaacaacaacagccaGAACGACAAGGAGGGGcacaaccaccaccaccaccaccatcagtACCATCATCTTcatcagcagcagcagcagcagcagcaacgtCGCTCTTCGTCCTCGTCGTCTTCGTCCGGCGAAGAGAATGATGACATGCCAGTAGCTTTGGATGAACGAAAGAGGAAGAGAGCAGCCGCCCAACAGccgcagcagcaacagcagcagcagcacacCCCGCCAGAGCAGACGAAGCCGCTAAACATGAGCAGCCATGGCATACTCGCTGCCGGACAGACGATTTTCTCCCAGTTCGGCGTCGACACGGACGACTTCCCGCCGGAGCCGCCGGCGCCTTCCGCGATCCCCGTCGGCCACGTCGACATGTCCGAGCACCACTCGCCGACGAGGACGCTCCTCGTCTCGAACGCCGCGACGCCCCTCCAGAGGACGGACATCTCGGACTCGACCAAGTTCTCCTcggcgtcggcggcggcggcgacgacggcCGCCGGCTCCGTCGTCGACGTCAAGAAGGAGGCGGACATCAAGTTCGAGACGTTGCGCTCCTACGACCAGGACAGCCTCCTCGACATGGAGTCGCACATGTCCGGCAGGGGGGACTCCATGGACAGCCAGGGCGACGGGGGCCAGCAGCAGGGGGGCATGCAGATGATCCAGCAGGACTTCAGCGGGATGATGGCTGGCGTCTCCAATAGGATAGATGTAAATAGCGGTGATGACTTAGTACCTGGCATGAAAAACAATGGCCACAGCGACATGCACATACCCAAATCGCACGGTGGCGGACCAAAAACTTGGACCCAAGAGGACATGGACATGGCCCTGGACGCCTTGAGGAATCACAACATGAGCCTAACGAAGGCCTCCGCGACTTATGGTATTCCCTCCACAACCCTCTGGCAAAGAGCGCATAGATTAGGAATAGACACGCCGAAGAAGGAAGGCCCTACAAAGTCGTGGACGGAGGAGAACCTAAACAGCGCCCTCGACGCCCTTCGTACCGGTACCATTTCAGCCAATAAAGCTAGCAAAGCTTACGgCATCCCTAGCAGCACCCTTTACAAAATAGCGAGAAGAGAAGGCATAAGACTGGCGGCCCCGTTCAATGCCGCGCCGACAACCTGGACACCAGAGGATCTCGAGAAGGCGCTCGAGTCGATCCGGACCGGACAGACGTCGGTCCAGAAGGCGTCGACGGAATTCGGCATCCCGACCGGCACGCTCTATGGCAGGTGCAAGCGGGAGGGGATCGAGCTGTCGAGATCTAACCCGACACCGTGGTCTGAGGACGCGATGGGCGAGGCTCTCGAGGCTGTTAGATTGGGCCACATGTCGATAAACCAGGCGGCGATCCACTACAACCTGCCCTACTCATCGCTGTACGGCCGTTTCAAGAGGGGCATAAAGTACGAGACGGACAACTTGGAGCTGAACCAGGACAGCCAGTCGCAGATGGACACGCACTCGTTCACGATGGAGTACTCGACCTCCCATCAGCAGATCCAGTACCAAAACCAGAACAGCTGA
- Protein Sequence
- MRVYASGDGDKDGGKRGRWRGEGECGVWWCLRRREAIRASLLRTADQLKIKGLCESPDDKENSDSPPPICGKGAAVDANNHPSAVDAAATVAASQPPTPAATAAAEPETHERYKKEIAIENSIAAEPDIYSHRDGGNPKAPKYPRVSSEPGSDERVPESGTCSTNNAAANSTTATIIINNNNSQNDKEGHNHHHHHHQYHHLHQQQQQQQQRRSSSSSSSSGEENDDMPVALDERKRKRAAAQQPQQQQQQQHTPPEQTKPLNMSSHGILAAGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMSEHHSPTRTLLVSNAATPLQRTDISDSTKFSSASAAAATTAAGSVVDVKKEADIKFETLRSYDQDSLLDMESHMSGRGDSMDSQGDGGQQQGGMQMIQQDFSGMMAGVSNRIDVNSGDDLVPGMKNNGHSDMHIPKSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYETDNLELNQDSQSQMDTHSFTMEYSTSHQQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00391867;
- 90% Identity
- iTF_00391867;
- 80% Identity
- -