Cmor001304.1
Basic Information
- Insect
- Cryptocephalus moraei
- Gene Symbol
- -
- Assembly
- GCA_946251935.1
- Location
- CAMIUL010000035.1:1750322-1766157[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-12 1.6e-08 34.5 0.0 1 39 468 507 468 511 0.90 2 4 4.4e-13 1.4e-09 37.8 0.1 1 39 522 560 522 563 0.95 3 4 4.6e-19 1.5e-15 57.0 0.0 1 45 577 622 577 622 0.98 4 4 5.4e-17 1.7e-13 50.3 0.0 1 40 629 669 629 673 0.92
Sequence Information
- Coding Sequence
- ATGCCCGTTAAAATCGTCCCCTGGGGACGAGGAAAGGGGGAACGGTCGCTCCTCGCCGCGCCGCACTCGAAAAAAAATTCCAATATTTACGCCGAACAGCCCTTCCCCTTGATATCCGACAACCCCCCGGCCGTCACCTCCCACCCCCTTCGATACTCCAATTTCCGATGGCACTCGTCGAAGCGCCGCTCGAGAGGATCTCTGCTCCGAACGGCCGACCAATTAAAGATCAAAGGGTTGTGCGAATCGCCTGACGACAAAGAAAATTCCGACTCGCCCCCTCCGATTTACGGGAAAGGTGCCGCCGTCGACGCGAACAACCCCTCGGCCGTCGACGCCGCCGCCGTCGCCGCCACCGTCGCCGCATCGCTACCCCCGACGCCGGCCGCCACAGCCGCCGCAGAGCCTGAAACCCACGAAAGGTACAAGAAGGATATCGCCATAGAGAAAGCAATAGCGGCGGAGCCCGACATTTTCTCCCACAGGGACGGCGGCAACCCGAAGGCACCGAAATACCCCCGAGTGTCCTCGGAACCGGGTTCGGATGAAAGAGTGCCAGAGAGCGGCACCTGCAGCACCAACAACGCCGCCGCCAACTCCACCGCCGCCACCATCATCAACAACAACAATAACAACAGCCAGAACGACAaggagaggcacaaccaccaccaccaccaccaccaccagtaccatcatcagcagcagcagcaacgtcgctcttcgtcctcgtcgtcttcgtccggcgaagagaatgATGACATGCCAGTAGCTTTGGATGAACGAAAGAGGAAGAGAGCAGCCGCCCAACAGCCGCAGCAGCAACAGCAGCAGCAGCACACTCCGCCAGAGCAGACGAAGCCGCTAAACATGAGCAGCCATGGCATACTCGCTGCCGGACAGTTCGGCGTCGATACGGACGACTTCCCGCCGGAGCCGCCGGCTCCGTCCGCCATCCCCGTCGGCCACGTCGACATGTCCGAGCACCACTCGCCGACGAGGACGCTCCTCGTCTCGAACGCCGCGACGCCCCTCCAGCGGACGGACCTCTCGGACTCGACCAAGTTCTCGGCGTCGGCGGCGGCGACGACGGCCGCCGCCTCCGCCGTCGACGTCAAGAAGGAGGCGGACATCAAGTTCGAGACGTTGCGCTCCTACGATCAGGACAGCCTCCTCGACATGGAGTCGCACATGTCCGGCAGGGGGGACTCCATGGACAGCCAGGGGGACGGGCAGCAGCAGGGCGGGATGCAGATGATCCAGCAGGACTTCAGTGGGATGATGGCGGGCGTCTCCAATAGGATAGATGTAAATAGCGGTGATGACTTAGTACCTGGTATGAAAAACAATGGCCACAGCGACATGCACATACCCAAATCGCACGGTGGCGGACCAAAAACTTGGACCCAAGAGGACATGGACATGGCCCTGGACGCCTTGAGGAACCACAACATGAGCCTGACGAAGGCGTCTGCGACTTATGGTATTCCCTCCACGACCCTTTGGCAAAGAGCGCATAGGTTAGGAATAGACACGCCGAAGAAGGAAGGCCCTACAAAGTCGTGGACGGAGGAGAACCTGAACAGCGCCCTCGACGCCCTTCGTACCGGTACCATTTCAGCCAATAAAGCCAGCAAAGCTTATGGCATCCCTAGCAGCACCCTTTACAAAATAGCGAGAAGAGAAGGCATAAGACTGGCGGCCCCGTTCAACGCCGCGCCTACTACCTGGACGCCGGAGGATCTCGAGAAGGCGCTTGAGTCGATCCGGACGGGTCAGACGTCGGTCCAAAAGGCTTCGACTGAGTTCGGCATCCCGACCGGCACCCTCTACGGCAGATGCAAGCGGGAGGGTATCGAACTATCGAGATCTAACCCGACGCCATGGTCGGAGGACGCGATGGGCGAGGCTCTCGAGGCTGTCAGGTTGGGCCACATGTCGATCAACCAGGCGGCGATCCACTACAACCTGCCTTACTCGTCGCTGTATGGCCGTTTCAAGAGGGGTATAAAGTACGAGACGGACAACCTGGAGCTGAACCAGGACAGCCAGTCGCAGATGGACACGCACTCGTTCTCGATGGAATATTCGACCTCCCATCAGCAGATACAGTACCAGAACCAGAACAGCTGA
- Protein Sequence
- MPVKIVPWGRGKGERSLLAAPHSKKNSNIYAEQPFPLISDNPPAVTSHPLRYSNFRWHSSKRRSRGSLLRTADQLKIKGLCESPDDKENSDSPPPIYGKGAAVDANNPSAVDAAAVAATVAASLPPTPAATAAAEPETHERYKKDIAIEKAIAAEPDIFSHRDGGNPKAPKYPRVSSEPGSDERVPESGTCSTNNAAANSTAATIINNNNNNSQNDKERHNHHHHHHHQYHHQQQQQRRSSSSSSSSGEENDDMPVALDERKRKRAAAQQPQQQQQQQHTPPEQTKPLNMSSHGILAAGQFGVDTDDFPPEPPAPSAIPVGHVDMSEHHSPTRTLLVSNAATPLQRTDLSDSTKFSASAAATTAAASAVDVKKEADIKFETLRSYDQDSLLDMESHMSGRGDSMDSQGDGQQQGGMQMIQQDFSGMMAGVSNRIDVNSGDDLVPGMKNNGHSDMHIPKSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYETDNLELNQDSQSQMDTHSFSMEYSTSHQQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392675;
- 90% Identity
- iTF_00392675;
- 80% Identity
- -