Cmor009836.1
Basic Information
- Insect
- Cryptocephalus moraei
- Gene Symbol
- -
- Assembly
- GCA_946251935.1
- Location
- CAMIUL010000288.1:387257-390569[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00028 0.52 10.8 0.0 16 46 97 127 91 134 0.87 2 4 0.027 49 4.5 0.0 22 48 159 185 150 190 0.84 3 4 0.01 19 5.8 0.1 22 48 187 213 182 217 0.84 4 4 0.065 1.2e+02 3.2 0.0 22 51 215 244 211 246 0.85
Sequence Information
- Coding Sequence
- ATGGACGACGCGAGAGCGACTACCTGCGATTGGTGCCTGGGGGAAGCCCCCATCGGGACGATCGAAGACAAATTGTGGCGCTTCTGGAAGACGATCAGCGCCGAGGGTTCGATCGCGGCGTCCCTCAGGAACATCTGTGAGAAATGTAAATCCCGTTTCGAGGAATTCTCTACTTACGTCGAGCGGTGCAGGCGCAACGAGTCCGTCATAGCCATGATCGTACCTACTGGGCGAGTCAAAGACAAAGTACCTTCCGACAGTCATTTGAAGGAGGACGATGAGGAGACCGCtcgacgtagtaatgctggcacgcccttccgatgtccgcactgcgacaagaccttcgcccacaacggcaacctgaaccgtcaccttcgtgtccacacgggcgacaggccgttccggtgcgcgcgctgcgacaagacgttcgcctgctccagcaaactgaagatccatcagcgtgtgcataccggcgacaaacctttcggttgtttacattgcgataaggcgttcacgcagtcgagcacgttgagggcgcacatccgcgtccacgccggcgataagccgttccggtgcgcgcactgcgacaaatcgttcgcctcgtccggcaacctgagggagcacctgagggtgcacaccggcgacaagcctttcgggtgcggccggtgcggcaagacgttcacccagtcgagctcgttgaagatccacctgcgggtgcacgcgggcgacaagccgttcgagtgtgcgcactgcgacaagacgttcgcccgggccggcggtctgaagacccatcaacgtgtccacacgggcgagaggcctttcaggtgttcgcactgcgacaggacgttcgAGGGGATTCCTCCAGGACCTGATGTTCCTCCCTACGCTGTCAGGCGGTGGTGA
- Protein Sequence
- MDDARATTCDWCLGEAPIGTIEDKLWRFWKTISAEGSIAASLRNICEKCKSRFEEFSTYVERCRRNESVIAMIVPTGRVKDKVPSDSHLKEDDEETARRSNAGTPFRCPHCDKTFAHNGNLNRHLRVHTGDRPFRCARCDKTFACSSKLKIHQRVHTGDKPFGCLHCDKAFTQSSTLRAHIRVHAGDKPFRCAHCDKSFASSGNLREHLRVHTGDKPFGCGRCGKTFTQSSSLKIHLRVHAGDKPFECAHCDKTFARAGGLKTHQRVHTGERPFRCSHCDRTFEGIPPGPDVPPYAVRRW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392087;
- 90% Identity
- iTF_00392087;
- 80% Identity
- iTF_00392087;