Cmor013673.1
Basic Information
- Insect
- Cryptocephalus moraei
- Gene Symbol
- -
- Assembly
- GCA_946251935.1
- Location
- CAMIUL010000449.1:48029-49318[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.3 5.6e+02 1.1 0.1 26 46 103 123 98 130 0.86 2 10 3.3 6e+03 -2.2 0.1 22 44 127 149 124 153 0.65 3 10 1.2e-05 0.022 15.2 0.0 21 52 154 185 148 186 0.90 4 10 0.076 1.4e+02 3.0 0.1 22 47 183 208 180 215 0.85 5 10 0.54 1e+03 0.3 0.2 21 37 210 226 206 237 0.73 6 10 0.91 1.7e+03 -0.5 0.0 23 46 240 263 226 265 0.74 7 10 0.00013 0.23 11.9 0.2 21 52 266 297 247 297 0.88 8 10 0.011 21 5.6 0.0 21 47 294 320 292 325 0.86 9 10 0.04 74 3.9 0.0 22 52 323 353 320 355 0.87 10 10 0.0047 8.7 6.9 0.3 22 47 379 404 370 408 0.87
Sequence Information
- Coding Sequence
- ATGGAAGCGACGACGTGCGATTGGTGCCTGCGAGAAGCACCAGTACAATTAATTCAGGAGAAGTTATGGCACTTCTGGAAAGTAATCAGCGCCGAAGGTCCGAACGTGGCTTCGCTGAGGAACATCTGCGCAGCGTGCGAGTCCCGCTACGAGGACTTCTCGGCGTACGTCGCAGCCTGCAAGAGCAACGAGTTGATGGTGGAGCGGATACTGTCCGTCAAAGATGAACCTTCGATTGATATCGAACACCATCCATTGACGAAGCACGAAGAACATACCGAGTTGGacgggacgccgaacgtccacgcctgcccgtactgtgacagggccttcgtctactcctcccagctaaagacccatctggccgtccacaaaggtgagaaacgtcacaagtgtccacactgcgccaaagcattcgcctatcgacacagcttgacgtgtcacctgcgcgtccacacgggcgagaaaccgttccagtgtccgcagtgcggctgggccttcacgcagtccaacgccctgaaacgtcacctgcacctccacactggcgacaagccgttccggtgcacgtactgctcgaaggcgttcgcgcagtccgtctacctgaaggagcacctacggacgcacaccggcgagaagccgtacaactgtccgcactgcgacaagacgttcgctcgtatgggcgatttgaagtgccactcgcgcatacatacgggcgagggtcggttcgcgtgtgtcgagtgcgataagacgttcagtcgttccaagagtttcaagaaacacctggacgtgcataccggcgagagacctttcgagtgtacgtactgcccgaaggcgttcgcacagtccatcaacctgaggatgcacctaaggttgcacaccggcgagaaaccgtacaagtgtccgcactgcgacaagacgttcgcccggtccggcgacctcaaggaccacctgcccgtccacacgggcgacaagccgttcaagtgtccgaagtgtgacaagagcttcgcgtggtcgagcagcctgaagaaccatctgcgggtgcatacgggtaataagccgtacaagtgtccggactgcgacgaggccttcgcccacacgaacagtctgaagatccactcgttcaagcatacgggccagagaccgttcgagtgttcgagctgtcgcaagacgtttagccagtccggccacttgaagaggcacctgcgtatacacgaacgcgccgcgagcctgtga
- Protein Sequence
- MEATTCDWCLREAPVQLIQEKLWHFWKVISAEGPNVASLRNICAACESRYEDFSAYVAACKSNELMVERILSVKDEPSIDIEHHPLTKHEEHTELDGTPNVHACPYCDRAFVYSSQLKTHLAVHKGEKRHKCPHCAKAFAYRHSLTCHLRVHTGEKPFQCPQCGWAFTQSNALKRHLHLHTGDKPFRCTYCSKAFAQSVYLKEHLRTHTGEKPYNCPHCDKTFARMGDLKCHSRIHTGEGRFACVECDKTFSRSKSFKKHLDVHTGERPFECTYCPKAFAQSINLRMHLRLHTGEKPYKCPHCDKTFARSGDLKDHLPVHTGDKPFKCPKCDKSFAWSSSLKNHLRVHTGNKPYKCPDCDEAFAHTNSLKIHSFKHTGQRPFECSSCRKTFSQSGHLKRHLRIHERAASL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392034; iTF_00392056;
- 90% Identity
- iTF_00392034; iTF_00392056;
- 80% Identity
- iTF_00392034; iTF_00392056;