Celi006243.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- Rfx2
- Assembly
- GCA_907269065.1
- Location
- OU026079.1:15310046-15318788[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-38 1.4e-33 116.0 0.0 3 78 105 180 103 181 0.97 2 2 0.95 1.3e+04 -2.6 0.0 25 38 531 544 528 550 0.76
Sequence Information
- Coding Sequence
- ATGGAAGTGCCACGCTACCGATCCTACTACCCCTGCGAGGGCGGCAATGGAGTCAACTACCACGTGCAGTATGTCACCGAACCTCAGGAGATATACAGTCAAGGGCATCAGATGGAGGCGCTGCGCTCGTACCCCGTGTACGGCGTGGCGACGGTGTCCAACGGGGTGGGCGGCGAGCCCGCGCCGCCCGACGGCGGCTGGGGCGGCGCCGCGGGCGCAGAGTACACCGCATACGGACTAGTGGTGGCGGGCGACGAGGCGGAGGCGCCCGCGTCCCCCGCCGCGCCGGGCGCCGCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTGGACCACTACGAGACCGCGGAGGGCGTGTCGCTGCCGCGCTCCACGCTGTACGCGCACTACCTGCGGCACTGCGCGGCGCACCGCCTGGAGCCAGTCAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCGTGGGGCTGCGCACGCGCCGCCTCGGCACGCGCGGGAACTCCAAGTACCACTACTACGGCATCCGCGCCAAGCCCAGCGCCGCCGACGAGCCCGACAGCGGCGACGACAAGAGCGACGGGAACGACAAGCAGGCGAGTCACACAAGTATAGAGGAGGCGGGGCGGGCGCGGCGCGCGGCGGGCGCGGCGGGCGCGGCGTGTCCGCTGGGCGCGGCGGCGGCGGCGCACCGGCAGTACCTGGGCGCCGTGGCCGCGCCCGAGCCGCCGGACCTGGTGCTGGACGCGCCGCCGCCCGACGTGGCGCCCGACGCGCCGGAGCTGCTGCGCCGGCACCACAGGGAGCACGGCGAGGCGTTCCTGGAGGCGGTGGCGGCGCTGGACACGGGCGCCGTGGAGGCGGCGCGGCGCGCCTTCTGGCGGCGCGCGGGCGCGGGCGCGGGCGCGGGCGCGGGCGCGGGCGGCGCGCTGTGCCGGCGCGCGCTGGCGCGGCTGGCGGCGCGCCGCGACGTGTGCCGCTGGCTGCGCGCCGCCGACACGCGCCTGTACCAGCGCGCCGTCGACCTGCTGCTGCCCGACGTGCTGCGCCCCATCCCGCCGCAGCTCACGCAGGCGATCCGCAACTTCGCGAAGAGCGTGGAGATGGCGCTGTCGGCGGGGTCGAGCGGCGCCCCGCTGGCGGCGGCGCGCGCGGGCGCGGCGGCGGGCGCGGCGCTGGCGGCGGCGCTGCGCCGCTACACGTCGCTCAACCACCTGGCGCAGGCGGCGCGCGCCGTGCTCACCAACCAGCACCAGATACACCAGATGGTGTCCGACCTGAACCGCGTGGACTTCCGCGTGGTCCGCGAGCAGGCGGCGTGGGCCTGCTCCTGCACGTCGCAGGCCAACGCGCTCAAGCTCGAGGCTGACTTCAAGGCGACGTTGGGGCGCGGCGCGACGCTGGAGCAGTGGGCGGCGTGGCTGGAGGGCTGCGTGCGCGGCGCGCTGGCGCCCGAGCGGCGCGGCGACCTGGTGGCGCGCGCGCGGCGCCTGCTGCTGGACTGGTCCTTCTACTCGTCGCTCGTCATCCGCGAGCTCACGCTCAGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGCTGCGGCTGCTGTACGACGAGTACGTGTCGTTCCTGATCGAGCGGCGCGTGGCGGCGCACCTCGCCGCGCCGCCCATCGCCGTGCTGCACCACCGCGCCGAAGAGGACGACTGTAGTCCGGAGGAGCCCCGCGCCGACGGGGACGAGGAGGACCCCGACTGGGAGTGGGGCGACGACGAGGACGACGACGACGACCTGGCGCCCGACCACAAGAAGCCCAAGCTGGAGTAG
- Protein Sequence
- MEVPRYRSYYPCEGGNGVNYHVQYVTEPQEIYSQGHQMEALRSYPVYGVATVSNGVGGEPAPPDGGWGGAAGAEYTAYGLVVAGDEAEAPASPAAPGAAPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCAAHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPSAADEPDSGDDKSDGNDKQASHTSIEEAGRARRAAGAAGAACPLGAAAAAHRQYLGAVAAPEPPDLVLDAPPPDVAPDAPELLRRHHREHGEAFLEAVAALDTGAVEAARRAFWRRAGAGAGAGAGAGGALCRRALARLAARRDVCRWLRAADTRLYQRAVDLLLPDVLRPIPPQLTQAIRNFAKSVEMALSAGSSGAPLAAARAGAAAGAALAAALRRYTSLNHLAQAARAVLTNQHQIHQMVSDLNRVDFRVVREQAAWACSCTSQANALKLEADFKATLGRGATLEQWAAWLEGCVRGALAPERRGDLVARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLLRLLYDEYVSFLIERRVAAHLAAPPIAVLHHRAEEDDCSPEEPRADGDEEDPDWEWGDDEDDDDDLAPDHKKPKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207846; iTF_00895656; iTF_01208939; iTF_00142829; iTF_00033557; iTF_00826556; iTF_00032638; iTF_00205796; iTF_00666244; iTF_00206728; iTF_00055134;
- 90% Identity
- -
- 80% Identity
- -