Cran018291.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Criorhina ranunculi
Gene Symbol
RREB1
Assembly
GCA_951813785.1
Location
OX638385.1:25552846-25558635[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.03 3 8.8 0.8 1 21 247 267 247 269 0.93
2 14 0.00028 0.028 15.2 0.2 1 23 279 301 279 301 0.98
3 14 8.1e-06 0.0008 20.0 5.2 1 23 307 329 307 329 0.98
4 14 0.027 2.7 8.9 2.8 2 19 531 548 531 548 0.97
5 14 4.2 4.1e+02 2.1 0.6 1 19 594 612 594 614 0.76
6 14 0.0075 0.74 10.7 0.1 1 23 764 786 764 786 0.97
7 14 0.00015 0.015 16.0 1.7 1 23 795 817 795 817 0.99
8 14 0.00039 0.039 14.7 2.0 1 23 823 846 823 846 0.97
9 14 0.0008 0.08 13.8 2.1 1 23 1179 1202 1179 1202 0.95
10 14 7.2e-05 0.0072 17.0 0.3 2 23 1514 1535 1513 1535 0.97
11 14 0.12 12 6.9 6.3 1 23 1541 1564 1541 1564 0.97
12 14 2.5 2.5e+02 2.7 6.3 1 23 1665 1687 1665 1688 0.95
13 14 0.0071 0.7 10.8 0.5 3 23 1737 1757 1735 1757 0.96
14 14 0.0012 0.12 13.2 4.8 1 23 1763 1785 1763 1785 0.99

Sequence Information

Coding Sequence
ATGTTGAAAACCTCAATTAAGAAGCAATTAGTAGACATTCCACTGCGAAAAATGGATCGACGTGAATCGACAACTTCGGAGTCATCTGTTGAGCCCATGGATTTGGGACGAACACCAATGAAAATCTGTACAGATATAAAAAAGGAAGCCAGCACAGCATTACAATTGCCAACGCCAACACTAAAAGATGCCATTTTATCAGATGCCAATAATAAATTCACCATACGTCATGAGTCTGATGCCGACGAGTCCGATGACAGAGATAAAGATCATCAGAGGCGATCGCACAGTCAACATCACTATCATCATCGTCGGCGTGGTAATAGTGGACGCGACAAACGTACCGTTCATTTGGAGTTCACTGATGGTCCACATTCATTGCGAAAGAAATTTCGCTTTAGCAGCAACAATAACGTTCCAGAGTCTGTGATCAATTTGAAACAAAAGACATCGAACAATGATTCCACAACATCGGggaagtcatcatcatcatcatcatcgacagcagcaacagcaacaacagcggCAAATATAACTGCAACAACAAACAATAATGAATCTGGTTTTGTGGACGCAAGCAGTAGCCATGTTCTAAACACATCCGGTTCATCGGCGACATCATCTGCATCCTCATCCTCGTCACCGACATCATCGTCGGCTGCTTCACCATCCGCCAGTAATAACGCGTCGGCTGTTTCCAGTCCCGAATCGGGCATGGGCGAACGTGACGACATGAAGTACCTTTGCCCAATTTGTGAAGTAGTGTCGGCGACACCGCATGAATTTACCAATCACATTCGATGTCATAATTATTCGTCTGGAGACACCGAAAATTTCACCTGCCGCATTTGCTCAAAGGTTCTTTCATCTGCTTCGTCGTTGGATCGACATGTTTTGGTGCATACTGGCGAGCGACCCTTCAATTGCAAATATTGCCAACTAACATTCACAACAAATGGCAACATGCATCGCCATATGCGAACTCACAAACAACACCAGCAACACTATCATCGAAATTCGAATGGAACgaagggtggtggtggtggtggtgttggagGAGCCGCCGGTAATAGTGCTACCTCCagcttaattccaattttagcATCGAACGACCAATCGGCTGCAGCTACAGCAGCAAACACGATGCCCTCCAAAACGACAAGCATAAGCAATGGTGTTGTTATTAACAGCAATGGTGACACAATTGGGGGAGGCGGCGGTGGTGGCGAAAGCTACGAAAGTGATGGTGGTTGCTCAACGGATTCATCAAGTGCCATCAGCCAAAGTtccaacaataataacaacagcaatacaaacaacaaaaacataagCAGTTTTAAGCGCAAGAGCACCGACAGCTTGGATGACATGACCGTGATGAAACGACGCGTGAAGACCACCATcaataacaacaacatcatcgatAGCATGCACACCGAGAAGAGTACCATCGAAGAGGCTGATACAATCGAAGACAttaagcagcagcagcaacataaGCTCTCTTGTCCAGTGTGTAATCGTAATGATTTTGTGGGGATGCTGGCGTTAGGCGCACATATGGACTGTGAGCATTCGGATATTCCCGCAAAGTGTCGTCATTGTGACGTTGTCTTCAAAACTCATAAGCAACTGAACGTTCATCCATGCACGAGTAAACTCAAAATTACGCATGGCTTCAAGGATATTACATTTGTGGACTTTTCGAGCGAGAAGTTCCCTTTAATAGCAAGGTCATTGTGCGAACAGAGTCTTCGAACCCCCATAGGCAGTCAGAAATTCGAATGCTCCAAGTGCTTTAGGGCGTTTCCATGTGCCAGTGCGGTCGAGATTCACGAGAAAGACTGCGCAACATCGGGAATGAATTTGTATGTGCAAGTGCATGATTTCTCCACTCGCAAGCAACGAGCGTATAGCGAGAGCTCTGGTGGTGCTGACGATGACGACAATCGACGTGAAGAGTTTTTTAAGGGTTTGTACTTGAAAAACAAATCTGCTGCACAAAGTATGACCAGTTTGTCCTCACCATCGTTGTCTGACGTTAAGTCGTCTGAGTTGGAGAAGACACCCGGAAAGATGTCACAGTTCGAGCCGTACCAGGACACCAAAGAGCTTGCTGATATCCAATCGATTTTGAACATTACTTCATCGTCGTCAACGAGCAATTTTCTGCGAAACTTTGAGAATTCAGTGAACGCACCGATCAGCAATTATGGTGCCGAGAATGGTGAAGAAGAGGCTCAGGACGCCTTCACCTCCGAGTTTCGTAAGATGAAGCTGCGCGGTGAGTTCCCATGTAAACTGTGCACAGCTGTGTTTCCCAATCTGCGCGCACTTAAGGGTCACAATCGCATTCATCTCAGTGAGGCGGGCCCAGGTCCGTACCGCTGCAATATGTGCACATATTCGATTCACGATAAGGCCGCGCTAGTGCGTCATATGCGCACCCATAACGGCGATCGGCCATACGAGTGCGCCATTTGCAACTACGCATTCACTACAAAAGCCAATTGTGAGCGACACCTGCGCAATCGTCATGCAAAGACTACACGTGACGAAGTGAAGCGAGCTATTATTTACCACCCATCGGAAGACTCCAACTGCGATGATGCCATGAAGAAACTTCACATGTTCTCTTCGCCCGAATTTGATCAAGACGACATGGAGCAACACCATCCACCAAAGGATCGATCCACTCCAGTGTCCCACCTTAAGGAAATGCTTCAGGCAGAGCCCAAGCCACTCAAGATTCAAGTAAAGAGCTTGGAGAAGTTAATCGATAAGGCGGTCCCGTCGTTCAGCCAATCAGATGAGATCGAAAAGGAGCAAGAGCAAGCAGGATCCCAGCACGATAAGGTCAACCGACCAATTGATCTAAGCATGGACGCTTTGGATTTGAGCAAAAAGTCAGTGAAAGTGCCTAAAATTGAGCCACCGCAGTCTCCGCCACCGTCACAGGTAGCTGCGGATTGCACACAACCGGAAGAACAGAACATCAACCTGAATGTCTTGGAGAAGAACCAACAGCTTGTGTTGGCCACCCATAGAAAGGTGTTAAATGAAACCCTGCCAAAGATGGACCCCGCACATTATTTTCAACTGACGCAGCTCTACAGAAATTTGGTTTTCCAGCCTCTACACCCGTTTTTGATGCAAAATTCATTTCTTTCGATGAATCCATTCTTTGAGCATGCTCCGGTCGGCGAAAACTCCTCCTCCATGTCGCCTGGCAGTCATAACCAAAATACACATCTAAAGTCCGCTCCGGAAGAGAGTAGTTTATTGATGAAGCAGTCCAGCTCACGCGCTCATTCACCAATGCCTTCTAAGAGCCAATTACTACCACGGAATCTTACTCCGTCCTCGTCACAAATGCCACCCATACCACGAAGCCATCCGCACTTGATGACGGGATCACATTCTTCAGGAATGCTCCCCACATCCGTGCCGAACTCAGGACCAGTAAAAATGGTCATTAAGAACGGTGTGCTCATGCCGAAGCAGAAACAACGTCGTTATCGCACCGAACGTCCATTTGCTTGTGAACACTGTTCTGCTCGTTTCACCCTGCGTTCTAATATGGAACGACACATAAAGCAACAACACCCCCAGTACTGGGCTCAACGACAAAGAAGTGGCCATCACATAATGCGTGGCCGTGCCAACAGTTCTTCTGTGCTCTCCCACATGCAACCTTCTCATTCGGCAATGGAAACTGCTCATCCAATTGGCGGCAGTGGCATGATGACGAATCCTCTGAGTGCCATCTCAGATCAAGTCAAATACGCCATACTTGCCCAACAGCTCAAGGCCCGAAAGGAAACAGACATTCTTCAACAGGCTCTGTCACAAGGCTCAAGCAGTGTGTTGACGACGAATTCTACCGCTGCCATAAGCAATCTTCGCAAATCACTCAGCTCCTCGTCGAACACAAACAATGGCAGCATAGAAGATGATGATCCGAAACTGGTAatcgatgaggatgatgaaaaagacgacgatgaggatgagTTGGAAGATCAAAAGcctgaaaatttgacaaaaatgctGAGCCTCCAAGCGCAGGCGACCATGGAAACAGCTCAGAAAATGGCCAACTCCATTTTGGAGCAGGCCAACTCCGTTCTGGAGCAGGCCATGAAAGCAGGCAGCACTAAAAACTCCTACAACACCAATCCAAATCCAGCAGAGGAGGATCGTCCGCTCAGCAAAGATTTCGGTctcaaactgtcaaaaaatatGATTGCTCAAGCCGAATCTGTGGGAAAGTTTCTCAAAGAGGTGGCAAGTTCTCCGTTTAAGGATGAATCCAATGACCTAGCGTCGGTCTCAAAGTTGGTTGACAACGCCACCAATTCCATGTCATTCAACAACTACTTTCGGCCTAGTGATGTCGTGAATCAATGTGAACAAAGTGACGAGGAGGGTCTGGTTGCCTCGGGCAGCGCATCAGAAAGCAATAACTCAGGTCCTGAGGATATAGTCGGCTCGCAAGAGCCAAAGAAGAAATCAGCCTACAGCTCAGCACCGAATCGTGTCTCGTGTCCATATTGCCAGCGAATGTTCCCCTGGTCCAGCTCACTGCGTCGCCACATTCTAACCCACACTGGCCAAAAGCCTTTCAAATGTTCCCATTGTCCCCTCCTCTTCACCACCAAGAGTAATTGCGATCGTCATCTGTTGCGAAAGCACGGAAATGTCGAATCAGCTGTTTCCTTATATGTCCCAATCGAAGACGTCAATGAACCCTTGCCAGTGCCCAAGTCGGTCGAGGAGATcgaactacaacaacaacaacagttgttactgcagcagcaacaaaaaaaactagaagAGCAAGAGAAGCTGGAGAAAATGCAACCGCAACAAAAGAAGCAATCGATCACAGAGAATCAGGAGCCAACAGCTAACGTAAATTCAGCACCAGCCACCATCGGTACGGTTGGTAAGGTCGAACCAACTCCACAAATAGTATCGTCGTCTGAGTTGCCATTTAAGTGCCACCTCTGTGACAGCTCCTTTGCAGAACGGTTTCAGTGCCTCGACCATATAAAGATCCATCATGCTCAAGAGTTCACTCTGCTTCTGTCCAAGGGTGCTATCGACAACGAAGCCGATGTCAACAATCAAGTGCAGTCCACCGAGGATGACGAAAAACGCGACGAAAGTCGTGGCAAATACCCCGACTACACAAATCGCAAAGTCATCTGCGCCTTCTGTGTGCGCCGTTTCTGGTCCACTGAAGATTTGCGTCGTCACATGCGAACTCACTCTGGCGAACGCCCTTTTCAGTGTGATATCTGCCTGCGTAAGTTCACCCTGAAGCACAGCATGCTACGCCATATGAAGAAACACAGCAATGGGGGACATTCCAGCAATGGTGCCACCAACGCCACCAATAGTGGCTCCGACATATCCGACGATGAACAGCCACCATCTAATGCTATGCTGGCGACAACACTACGCTCCCAAAAGATTCAGGAGCTCTTTTCGAAAGCCAACAGCGAGTGGCGCAGCAATCGCCTTTCAGGCGAACACAAGGAGAACATCGAAGAGCACAACAATCAGTCCGACCTAATTGGCAATCTGCTGGGCATCAGTGATCAAGGCATCCTTAACAAGCTTCTTTCATCGGCCGACGAAGCTGCCAAGTTTCTGGGCGTAGAAAAGTAA
Protein Sequence
MLKTSIKKQLVDIPLRKMDRRESTTSESSVEPMDLGRTPMKICTDIKKEASTALQLPTPTLKDAILSDANNKFTIRHESDADESDDRDKDHQRRSHSQHHYHHRRRGNSGRDKRTVHLEFTDGPHSLRKKFRFSSNNNVPESVINLKQKTSNNDSTTSGKSSSSSSSTAATATTAANITATTNNNESGFVDASSSHVLNTSGSSATSSASSSSSPTSSSAASPSASNNASAVSSPESGMGERDDMKYLCPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCQLTFTTNGNMHRHMRTHKQHQQHYHRNSNGTKGGGGGGVGGAAGNSATSSLIPILASNDQSAAATAANTMPSKTTSISNGVVINSNGDTIGGGGGGGESYESDGGCSTDSSSAISQSSNNNNNSNTNNKNISSFKRKSTDSLDDMTVMKRRVKTTINNNNIIDSMHTEKSTIEEADTIEDIKQQQQHKLSCPVCNRNDFVGMLALGAHMDCEHSDIPAKCRHCDVVFKTHKQLNVHPCTSKLKITHGFKDITFVDFSSEKFPLIARSLCEQSLRTPIGSQKFECSKCFRAFPCASAVEIHEKDCATSGMNLYVQVHDFSTRKQRAYSESSGGADDDDNRREEFFKGLYLKNKSAAQSMTSLSSPSLSDVKSSELEKTPGKMSQFEPYQDTKELADIQSILNITSSSSTSNFLRNFENSVNAPISNYGAENGEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSEAGPGPYRCNMCTYSIHDKAALVRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSNCDDAMKKLHMFSSPEFDQDDMEQHHPPKDRSTPVSHLKEMLQAEPKPLKIQVKSLEKLIDKAVPSFSQSDEIEKEQEQAGSQHDKVNRPIDLSMDALDLSKKSVKVPKIEPPQSPPPSQVAADCTQPEEQNINLNVLEKNQQLVLATHRKVLNETLPKMDPAHYFQLTQLYRNLVFQPLHPFLMQNSFLSMNPFFEHAPVGENSSSMSPGSHNQNTHLKSAPEESSLLMKQSSSRAHSPMPSKSQLLPRNLTPSSSQMPPIPRSHPHLMTGSHSSGMLPTSVPNSGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWAQRQRSGHHIMRGRANSSSVLSHMQPSHSAMETAHPIGGSGMMTNPLSAISDQVKYAILAQQLKARKETDILQQALSQGSSSVLTTNSTAAISNLRKSLSSSSNTNNGSIEDDDPKLVIDEDDEKDDDEDELEDQKPENLTKMLSLQAQATMETAQKMANSILEQANSVLEQAMKAGSTKNSYNTNPNPAEEDRPLSKDFGLKLSKNMIAQAESVGKFLKEVASSPFKDESNDLASVSKLVDNATNSMSFNNYFRPSDVVNQCEQSDEEGLVASGSASESNNSGPEDIVGSQEPKKKSAYSSAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIEDVNEPLPVPKSVEEIELQQQQQLLLQQQQKKLEEQEKLEKMQPQQKKQSITENQEPTANVNSAPATIGTVGKVEPTPQIVSSSELPFKCHLCDSSFAERFQCLDHIKIHHAQEFTLLLSKGAIDNEADVNNQVQSTEDDEKRDESRGKYPDYTNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSNGGHSSNGATNATNSGSDISDDEQPPSNAMLATTLRSQKIQELFSKANSEWRSNRLSGEHKENIEEHNNQSDLIGNLLGISDQGILNKLLSSADEAAKFLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01223735;
90% Identity
-
80% Identity
-