Casp014498.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- PAXBP1
- Assembly
- GCA_958507055.1
- Location
- OY293827.1:8319052-8322802[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.34 9.2e+03 -2.5 0.0 63 114 143 194 133 195 0.74 2 2 1.6e-30 4.3e-26 93.7 0.4 4 272 495 701 493 703 0.90
Sequence Information
- Coding Sequence
- ATGTCTCTGTTCAAAAAACCTAAGAAGAGTATAGTTCAACGTAGAGTCTTCACCGAGAATGACGACGAAGACGATGAATCAAACGTCTTACATGACCCACCTCCAGTTGAAAAGAAGccaaagaaaaaagataaatCATCCAAATCCAAACAAACCCTACTAAGTTTCGATGCGGAGGAAGAAGGTGAAGTGTTTCAAGTGAAAAAATCTTCACATAGTAAAAAGGTTCTGCGTATGTTtgagaaagaaaagaaaaagaaggaGCTTAAACAAGAAAGAGAGGATGTTAAATCTAAAGAGAAAACGGAAATAGTTACTGATGATTTTGTTCTGGTAGTGAATTCCAGTCACAAAAAACCAAGCAGTCCTCCTCCAGCACCTATGATACTCAGTGGTCGTGATGCTCTTTGTGCTGGTAAAGACGATCTTTCATCAGAGGAAGAAGAGGAGcaaaatcatcgtttttccaaaCCTGACAATTTCAAAAGAGTCCTTGAATCAGGAGCTATACCCGATGCCGCCATGATTCATGCTGCGCGGAAACGTAGACAGAGAGCCAGAGAAATGGGAGACTTCATTCCAACAGAGGAAGAAGAACCAGAAGACAAAGGTAGACTAATGAGAGAAGATGAGAATGATGGCAGTGATGAAGAAAGAATCGACATGGACGTTAACTTGATTTTGAGGGATCAGGAGCGGAGACGTGAACAATTTCTTTCGGCTCAAGGCTCTGACGAAGTCGATGAATGGGAGGATCAACAGATTCGAAAAGGAGTAACAGGTGCTGCTATGGAAGCTGTCCGAGAGCTTCGATACGCTCCAGAGTGCCCTCCTGCACCACGAATCACCACTCAAATCCCAATTATTGAACCGGGAATTCCACGAACTCCTGAAACAATTGCAGCTAAATTGAAAGAACACTTTGAAGCTGCATGTCGGACCAGAGATGAACACCAAGCAAGATTGGAAAAAACCAGAGAAGAGATACGTGAAACTAGAGAGGAGCTTGAGCAGTTAAAATTGAAAGCACCCTCAGCTGCTGAACGTTTCAGATTTTATCAAGAACTTCGGGGATACATCACAGACCTTGTGGAATGTCTGGATGAAAAAGTTGGCGTCATCACTAATCTGGAACAAAGAGCCATCGATCTTATGTCACGTAAATCGGATTGGTTGGTTGAAAGAAGAAGGCAAGATGTCAGAGATCAAGCTGAAGAGGCAACTAATAAAGGAGGTGTGATGCGAAAAACTCCAGAAgatgaagaaaaacaaagaaGAGCAGCCGAAAGAGAAGGTAGACGAACTAGAAGAAGAAGAGCCAGAGAGGTGTCAGGTCAACCTAAACACGTTGAAGGTATGTCCAGTGATGATGAGGTGTCACAACAAGATTCAATGAACTTTATCAAAGATAAGGAACAAATCGAAACGGAGTTGCGTGAAGTTTTCGAAGATGTTGTCGAAGATTATTCCTCGGCCGCAAATATACTGATACATTTCGAACAGTGGCGCTCAACAGATTTGACAGCGTACACAGAAGCATATGCAACATTTTGCCTCCCAAAGGTTGTCAGTCCACTTGTgagaattaatttaatattctggGACCCACTCAATGAAACGattGAACTAGAGAAATTGAATTGGTATAGAACACTGGCTCTTTATGGACTACACGATGATGAGACTGAGGATAGCTTAGCAAAAGATCCAGACATCAATCTATTGCCTACGATTATTGATAAAGTCATAATACCCAAACTTACCACACTGGTCGATAGATGTTGGGACCCACTTTCAAGTTCTCAAACACTCAGGCTGGTCGGCATAGTTGGCAGATATATCAGAAGATTTCCATCGCTAGATCCATCTAGCAAGTCTCTACATAACCTCTTCAGCGCAGTGATGCACAAATTAAAAACCTCATTGGAGCATGATGTTTTCATTCCAATAACACCAAAGCTGTCAGAAAGTAAATCACCCTTTTTTCAACGACAATTTGCCAGTGGTTTAAAGCTGCTCAAGAACATCACTAGTTGGCAGGGCATCTTGAATGATAATACCCTTAAAGAGTTGGCCCTCACATCACTGTTGAATAGATATTTGCTGAGTGCCTTGAAATTTTGCACTCTCACAGATGCTGTTCAAAAGGTGCGACTCATCAGTTTGATTTTGCCAAGAATATGGCTGCTGGGTAATACGCCAGAGTTCAAAATGTTCACCATGTCAGTGATGAATCTGCATCAACAGCTTGATAAAGATAATCCACTGCATTTAGAGCACATTGACACAACAACGAGCATCCTAAAGACGCTGAGATCGCAATCGTAA
- Protein Sequence
- MSLFKKPKKSIVQRRVFTENDDEDDESNVLHDPPPVEKKPKKKDKSSKSKQTLLSFDAEEEGEVFQVKKSSHSKKVLRMFEKEKKKKELKQEREDVKSKEKTEIVTDDFVLVVNSSHKKPSSPPPAPMILSGRDALCAGKDDLSSEEEEEQNHRFSKPDNFKRVLESGAIPDAAMIHAARKRRQRAREMGDFIPTEEEEPEDKGRLMREDENDGSDEERIDMDVNLILRDQERRREQFLSAQGSDEVDEWEDQQIRKGVTGAAMEAVRELRYAPECPPAPRITTQIPIIEPGIPRTPETIAAKLKEHFEAACRTRDEHQARLEKTREEIRETREELEQLKLKAPSAAERFRFYQELRGYITDLVECLDEKVGVITNLEQRAIDLMSRKSDWLVERRRQDVRDQAEEATNKGGVMRKTPEDEEKQRRAAEREGRRTRRRRAREVSGQPKHVEGMSSDDEVSQQDSMNFIKDKEQIETELREVFEDVVEDYSSAANILIHFEQWRSTDLTAYTEAYATFCLPKVVSPLVRINLIFWDPLNETIELEKLNWYRTLALYGLHDDETEDSLAKDPDINLLPTIIDKVIIPKLTTLVDRCWDPLSSSQTLRLVGIVGRYIRRFPSLDPSSKSLHNLFSAVMHKLKTSLEHDVFIPITPKLSESKSPFFQRQFASGLKLLKNITSWQGILNDNTLKELALTSLLNRYLLSALKFCTLTDAVQKVRLISLILPRIWLLGNTPEFKMFTMSVMNLHQQLDKDNPLHLEHIDTTTSILKTLRSQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226913;
- 90% Identity
- -
- 80% Identity
- -