Casp046378.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293832.1:29842174-29843673[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-08 6.3e-06 27.3 0.0 1 41 15 55 15 57 0.97
Sequence Information
- Coding Sequence
- ATGCCAAATAAAAGGAAACggattacagaaaaatgttcatgGTCAGAAGAATCCATGAAGTCGGCTTTGGAAGCTGTCGAAAATGGAGCAGCACAAAGAGAGACTGCACGTCGTTTCAACGTACCTTTAAACACATTACGAGATAGAATAAAGAAAGGTCATTATTATCCTGCAAGGATGGGAGCTCGAACAGTTTTTACGGAAGAACAAGAAAACGAAATTTGTCAACATTTGCTGcatttgtcaaaaatgttttttggttTAACTCCCATCCAGACTCGACAAGCTGTTTTCGAGTATGCTGCAAGGAACGCCATacctaacaaatttaataaagataGGAAGATGGCGGGTAAAGACTGGATGTCTAGTTTTCTTAAAAGGCATCCCAATCTCAGCTGCAGAAAACCTGAggctacatcaattaaccgtaTTACAGGTTTCAACAAGGACGAAGTTGACAGATTTTacgaaaatttaatttctttgatgGAAAAGTACAAATTTGGACCAACTCGCATATTTAACGTAGACGAGACTGGCATCACTACAGTCCACAAGcctacaaaaattattgctgGCAAAGGAGTTAAGCAAATCGGTATTGTGACAAGCTGGGAAAGGGGAAAGAACGTCACCGTTTGTTGTTGCATGAGTGCAAGTGGCAGTTTTACACCACCTTTATTCATATTTCCCCGCCTCAGAATGGCTCCTTCTCTTGAAAGAAATGGTCCACCAGGGTCTATCTACAAATGTACGAAGAATGGATGGATGACCGAGGAAGTTTTTCACATGTGGCTTCAGCATTTTGTTAGTACAAATAAACCAACCAAAGAAGATCCAGTCCTATTAGTTCTGGACAACCATTGCAGCCACATATCTCTCAGAATTTACAACTTCTGTAGGGAGAATGGTGTCGTGTTATTGTCTTTACCTCCACATTCTTCACACCGTATGCAACCGCTTGACCTAACATTCTTCGGACCACTTAAGAAAGCATATGATATAGAGTGTGATCTATTCATGAAATCAAAcgcatatgaaaaaataacaatgtatGACATCGcgcaattattttctaaatcttatATGAGAGTTGCTAACCCTTCTAAGGCAATTAAAGGATTTGAAGTCTCTGGAATATATCCAATCAACAGCAATGTTTTCTCTGAAGAGGATTTTTATACTTCATCTAATGCGTCATTTTCTAGATCGCCTCCTCAACGAAGCATCTCAAAAGACCAACCAAATTCTTCATCTGATCAATTAGGTCTCTCAGCACCAACAGAAACGTCTTTTCATGATATAACTCCGCTTCCAAAGAAAGTTTCTTCTATGAATGGCCCCAAACAGAATCGTAAAAAGCAGAGATCTGAAATTCTCACATCAACGCCTTTAAAGGAACAGCTAGAAATTGCCGAGctcaaaagaagagaaaatgaaaGGAAGAAAATGGAAGCGGCatgcaagaaaaaaaaagggAAAGTTGGTAAAGGATAA
- Protein Sequence
- MPNKRKRITEKCSWSEESMKSALEAVENGAAQRETARRFNVPLNTLRDRIKKGHYYPARMGARTVFTEEQENEICQHLLHLSKMFFGLTPIQTRQAVFEYAARNAIPNKFNKDRKMAGKDWMSSFLKRHPNLSCRKPEATSINRITGFNKDEVDRFYENLISLMEKYKFGPTRIFNVDETGITTVHKPTKIIAGKGVKQIGIVTSWERGKNVTVCCCMSASGSFTPPLFIFPRLRMAPSLERNGPPGSIYKCTKNGWMTEEVFHMWLQHFVSTNKPTKEDPVLLVLDNHCSHISLRIYNFCRENGVVLLSLPPHSSHRMQPLDLTFFGPLKKAYDIECDLFMKSNAYEKITMYDIAQLFSKSYMRVANPSKAIKGFEVSGIYPINSNVFSEEDFYTSSNASFSRSPPQRSISKDQPNSSSDQLGLSAPTETSFHDITPLPKKVSSMNGPKQNRKKQRSEILTSTPLKEQLEIAELKRRENERKKMEAACKKKKGKVGKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388097;
- 90% Identity
- iTF_00388097; iTF_00388066; iTF_00388098; iTF_00388099; iTF_00388100; iTF_00388101; iTF_00388102; iTF_00388103; iTF_00388104; iTF_00388105; iTF_00388106; iTF_00388107; iTF_00388108; iTF_00388109; iTF_00388110; iTF_00388111; iTF_00388112; iTF_00388114; iTF_00388095; iTF_00388096;
- 80% Identity
- -