Caur024474.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- RNF216
- Assembly
- GCA_949320105.2
- Location
- OX439475.1:48291657-48310374[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-13 2.3e-09 38.4 0.7 1 39 56 94 56 105 0.92 2 4 2 4e+04 -6.6 6.3 7 17 440 450 419 469 0.69 3 4 2 4e+04 -7.6 7.3 48 54 537 543 509 554 0.58 4 4 2 4e+04 -6.3 7.8 32 53 593 611 569 622 0.50
Sequence Information
- Coding Sequence
- ATGGAAAAAGGCGGTAACCCACCACCATACTCCCCACCATACGGTCAACCGCAACCATATGGTCAACCTGGTTTCCAAGTACCACCTCCAGGACCACCACCCCACCACCACGAACCTGCGCAAACTGTTATCGTAACGCATACTGTAGCCCAAGTACCAGTGGGACCTTCTCCAACTTCAACAACATGCCCATCGTGCCATGCTCAAATAGTCACATCAGTGGAAACTGAAACTACCACGAAAACTCATTTATTCGCCTTACTGTTGTGCCTGTTCGGGATGGAAGATCCTCCCAACTTTCTAGTTCTTCTACGGGAAATATTTCCAAGAACCAATGAACAAGCCATAGCCAATGTTATCCAAATGATAGAGGAAAATAGTCCTGATGACAGTTTTGAAGAGAAAGTTGAAAATATGATAAATTTATTATCTGGTGAAGGGGCACAAGGCCCACTGCCTGACTTAAACCCTGCTCAGCCTAATTCTAACACTGAAGAGCTATATAgaagtttaactttaatttatgagAACGTTGATGAAGATTATTTGCTAGACTTTATCAGTTCTAAACCTGCTAATTATGATATAGAAGACGCAATTGAAGAATTAAATGAAcGTGATTTACCAGAAAAACAAATAGATCCCATAGTTATTAAAGACCGTCTACAACAAGCACTACCAAATGCTGATCCGAGTTTTTTGCAAAAAGAAGCCCAACGATTAGCTCGACTTCCTTCTCAAGAAATAGACATATTTGTTCAAGATGTAATTGAGAAAGACGATTACCCAACAATGCATGACTATCTTAAAAATAAGAAACACACCAGCGAAATGGGCTTGTACACAGAAAACTTCagcataaaaaaatttttagagaTTATACCTAATCCAGAAGAAAAATTTACGAACCCCAAGAGACAACTTTCTTTAGGCGAAAATTCACACGAAAACGATGAAAAATACGCTCTAAACTTTCTGTATAATCAATATAGATTTATAAGAAGAAAATACATAGAATTGTTGTTTAAATGGGAACATAAAAATCTGGTAGCAATTTGTGATAGACtggaaaagttgaaaaaaagtctGAAGAAGCCTAGACCTGTAGAATCAGCATCTGTAGATTCAGAAAATATTCCTCTGCTGCAAGTGATAGCATATTTAAAACATCgtaaattgattaaaaaagaattcaaacttaaaaacgaaaaatatcgCCAGGCCAAACAAGAAGCTCGAAAATTCAACCTTTTAGAAACTTGTCAGTGTTGTTACGATGATGAATTAATTCCGGAAGAATGCTATTTTTGCATGAAAGATTGCGTTTTCTGCAAAGACTGTGTTAAAAAAGGTGTAGAATATGGTGTTGGCAAAGGTGATATAAAATTTCCTTGTATGTCGAATTGCAATTCAGAATTCAGTTTGCACACATTGCAGatggTATTACCAAATAACATGTTTCAACGACTAACCCAAAGAATAGCAAGTGAAGAAATAAAGAAAGCTAACGTCGACGGTCTGGAGACTTGTCCGTTTTGTGATTTCGCCATGATTTTACCAGAAAACGAAAAGGTATTCAAATGTATTAACGAGGAATGTCTTGTCGAATCTTGTAGACAATGCCGACATAAGTCGCACATCCCTAAAAGATGTAATGAGATAGAATACGACGAGGATGTTAGAAGGAGAACTTTCATAGAAAACAAAATGACCGAGGCTCTTACTAGAATTTGTTACAACTGCAAAAAACCATTTATAAAATCTACTGGCTGCAATAAGATGACCTGCATTTGTGGAGCGAAGATGTGTTATCTCTGTGGACAAGCTGTTAATGATTACAAACATTTTAGTTCTCAAACttgTCCCTTACATAGCAATGATGCGGAAGTGAATTTGCAGAGGGTATTAAAAGGTGCAGAACAAGCTAGGAACGAATTGGGTGGAGTTGAAATTAAATTTGATCCTGCTGCAAATATACAGGAATTTTTTCGTGATGAATGA
- Protein Sequence
- MEKGGNPPPYSPPYGQPQPYGQPGFQVPPPGPPPHHHEPAQTVIVTHTVAQVPVGPSPTSTTCPSCHAQIVTSVETETTTKTHLFALLLCLFGMEDPPNFLVLLREIFPRTNEQAIANVIQMIEENSPDDSFEEKVENMINLLSGEGAQGPLPDLNPAQPNSNTEELYRSLTLIYENVDEDYLLDFISSKPANYDIEDAIEELNERDLPEKQIDPIVIKDRLQQALPNADPSFLQKEAQRLARLPSQEIDIFVQDVIEKDDYPTMHDYLKNKKHTSEMGLYTENFSIKKFLEIIPNPEEKFTNPKRQLSLGENSHENDEKYALNFLYNQYRFIRRKYIELLFKWEHKNLVAICDRLEKLKKSLKKPRPVESASVDSENIPLLQVIAYLKHRKLIKKEFKLKNEKYRQAKQEARKFNLLETCQCCYDDELIPEECYFCMKDCVFCKDCVKKGVEYGVGKGDIKFPCMSNCNSEFSLHTLQMVLPNNMFQRLTQRIASEEIKKANVDGLETCPFCDFAMILPENEKVFKCINEECLVESCRQCRHKSHIPKRCNEIEYDEDVRRRTFIENKMTEALTRICYNCKKPFIKSTGCNKMTCICGAKMCYLCGQAVNDYKHFSSQTCPLHSNDAEVNLQRVLKGAEQARNELGGVEIKFDPAANIQEFFRDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -