Caur027427.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439476.1:18225509-18228187[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.081 8.1e+02 1.4 0.0 14 45 83 118 79 122 0.72 2 13 0.00097 9.8 7.5 0.1 20 44 149 173 141 181 0.88 3 13 0.88 8.8e+03 -1.9 0.0 23 43 180 200 176 203 0.84 4 13 0.02 2e+02 3.3 0.1 21 45 262 286 236 292 0.86 5 13 0.0019 19 6.6 0.1 22 46 347 371 339 375 0.88 6 13 0.037 3.7e+02 2.5 0.0 22 45 397 420 379 426 0.84 7 13 0.23 2.3e+03 -0.1 0.1 22 46 424 448 421 453 0.84 8 13 0.0014 14 7.0 0.0 25 45 615 635 611 641 0.90 9 13 0.59 5.9e+03 -1.4 0.0 27 45 673 691 670 698 0.88 10 13 0.0025 25 6.2 0.0 22 44 696 718 693 721 0.88 11 13 0.012 1.2e+02 4.0 0.0 22 45 724 747 719 753 0.88 12 13 0.16 1.6e+03 0.4 0.1 22 47 836 861 830 867 0.66 13 13 0.75 7.6e+03 -1.7 0.0 26 45 868 887 854 890 0.85
Sequence Information
- Coding Sequence
- ATGGATTCTCAAACCGCGCCCGCGGAAACATTGAATCACGTCATTAAAAACGAAATTCTAAAATCCGAAGACGATTGTGAGGTAGAAAAGTTCGATAGCGATCTGGATATTAAAAACGAAGATGATCATAGATCAGAAAATGATAGCGAAGAGGACGATAATTCAGAAAACAGCAAAACATCTGAAAACATTATCATTAAACCAGATATCGATTTCGATAGCGAATCATCAGAAGATGATACGAAAAAACTAAGAAAACGAAAATCAAAGAACGATAAACCAAAGTTAAAGTACCCCTGTACTTTATGTTCAGCCTCGTTTGATAAAACGGTTCTTCTCAAAAGACATTTAAGAACGCATCCAgaagacaaaaaatataaatgtaacACCTGCAATCGTAGTTTTGGCCATTTCGGTCACTATAAGAGACACATGGTCAGCCATACCAGCGAAAGAAACTTCATATGCGAGGTTTGCAGCAGTAGTTTTCGACATGAAGATAATTTGAAGAGGCACATACTGATTCACACcggtgaaaaaaattatagatgcACAACGTGCGGTAAAGCTTTCACTCAAAGTTCGTCCTTGAAGCAACATTATATCACGCACAATGGTGAAAAGAAGTTCAAATGCGAAACGTGCGATAAAAGTTTTAGTCGTTTAAACGCCTACAAGAAACATTTGTTGATACATACTGGTGAAAAAAAGTTTCAGTGCAATATTTGCGGTAAGGCGTTTTACGGTAAACGCGACGTCATTCGACATCGAGTAACGCATACCGGTGAAAAAAACTACATATGTCCTATTTGCGGTCATAGCTTCGGACATGAAAATTCGTTAAGAATGCACTTATTGATACATTCCGGGAAACGAAAACACAGATGTGGGATTTGCGATAAATCGTTTTTTACAAATGCGGCTTTGAAATCGCATCAAATCAGTCACACCGGCGAGAAGAACTACAAATGCGAGATTTgccacaataattttgcttaCTTAAATACCTACAAGAAACATATGTTGACTCACACTGGAGAAAAGAAATATAAGTGTCATATATGCGAAACCGCGTTCACACAGAGTTACTGTCTATCGCGCCATCTCAAAATTCACACTAGAGAAAACTCCACGACTTCCAAAATTCGCGAACGAGAAAAAACCGAAACTTTAATAACTCGcgcaggtgaaaagaatttcaaatgcgaAATTTGCGGCAGTACTTACGCTCACCTAAAAAATTATAAGAGACATTTATTAGTacatacagaaaaaaaatataaatgtaaaatttgtgaTAGAGGATTCACGAGAAGCTTCTGCCTAAAACGACATTATAAAGTTCACGCTGAGAAGAAACGTCCTACCCCGCCACCAGTAGCCCCAAGCGAAGAATTAATCTTAGAAAATACTCCACCGCAACTTTCCCGGTTGGAAAATCTCCAGATACCTACGAACGCGCCTGAAGAGTGTTTCAAAATACagccaatagaagaaattaaCGTGGAAGTAGACGTTAATATTGGAGTACGCAATGAGAACGAATCACAACAAAATACAGACTGGTCTACAGATATTAATTCAAACTCCCACGACAGTTTTATATTCACGATGGACAACTATGAAACCAATAATGATGATAATGATGATAACGATGATGAAGATTTTAAGGACGATTTAAAAGACCCCGAAATTGATAGTACGGAAGAAAACTCGCATCCAAATTCTCAAGAAAATAGCGAAGTCGATATCAAATCCGAGAACGACGACGCTAAAACCGACATAGAagtagatataaaaaaattattaaactacGAATTCGTAGATGGGGGTAAAAAGAAATATACGTGCACCCTATGTTTCCAAGTATTCGACAAAACTGTCAAGCTAAAAAGGCACTTAAGATCGCATCCGGaaaagaagaaatacaaatGTATCGGTTGCAATCAAAGTTTTGGTCATTTCGGGCATTTTAAACGACACATATTAACTCATACGGCCATAAAGGATTATATTTGTGAAATTTGCAGTAAAGGTTTTCGCTTAGAGGATACTTTGAAGAAGCATCTCTTGATTCATACCGGagagaaaaattataaatgCACGATTTGCGATAAAACGTTCACCCAGAGTTCGACGTTAAGACAACACCTTGTAACTCACACCGGTGAAAAAAAGTACACGTGCGATGTTTGTCATAAAAGGTTCGGTCAAGTGAGCAActacaaaaaacatttgttGATACACACCGGAGTCAAAAAATTCCGGTGTAACTTTTGCGATAAAGCCTTTTATGACATGGCTTGTTTGAAACGCCATCGACTGATCCACACCGGCGAAAAGAACTTCATGTGTAACGTTTGCAATAGAAGCTTCAGTAGAGAAAAATGCTTAAAGAGCCACCAAGCGATTCATACCGgtgaaaagaaatacaaatgtGCGTTTTGCGAAAAATGTTTCTTTACTTATTCCGGTTTAAAAAGTCACGAAATAAATCATACCGGCGAACAGAAGTTCCAATGTGAGACTTGCAGTAAATGTTTTATTCATAAAAGTAATTTCAAAAAACATTTGGCCATCCACGATGTGGATAAGAAATTCAAATGTACGGTGTGCGATAAGGGCTTTTATCGAAGCGATCACTTAAAAAAGCATTTAATGCGGATGCATGGTAGATAG
- Protein Sequence
- MDSQTAPAETLNHVIKNEILKSEDDCEVEKFDSDLDIKNEDDHRSENDSEEDDNSENSKTSENIIIKPDIDFDSESSEDDTKKLRKRKSKNDKPKLKYPCTLCSASFDKTVLLKRHLRTHPEDKKYKCNTCNRSFGHFGHYKRHMVSHTSERNFICEVCSSSFRHEDNLKRHILIHTGEKNYRCTTCGKAFTQSSSLKQHYITHNGEKKFKCETCDKSFSRLNAYKKHLLIHTGEKKFQCNICGKAFYGKRDVIRHRVTHTGEKNYICPICGHSFGHENSLRMHLLIHSGKRKHRCGICDKSFFTNAALKSHQISHTGEKNYKCEICHNNFAYLNTYKKHMLTHTGEKKYKCHICETAFTQSYCLSRHLKIHTRENSTTSKIREREKTETLITRAGEKNFKCEICGSTYAHLKNYKRHLLVHTEKKYKCKICDRGFTRSFCLKRHYKVHAEKKRPTPPPVAPSEELILENTPPQLSRLENLQIPTNAPEECFKIQPIEEINVEVDVNIGVRNENESQQNTDWSTDINSNSHDSFIFTMDNYETNNDDNDDNDDEDFKDDLKDPEIDSTEENSHPNSQENSEVDIKSENDDAKTDIEVDIKKLLNYEFVDGGKKKYTCTLCFQVFDKTVKLKRHLRSHPEKKKYKCIGCNQSFGHFGHFKRHILTHTAIKDYICEICSKGFRLEDTLKKHLLIHTGEKNYKCTICDKTFTQSSTLRQHLVTHTGEKKYTCDVCHKRFGQVSNYKKHLLIHTGVKKFRCNFCDKAFYDMACLKRHRLIHTGEKNFMCNVCNRSFSREKCLKSHQAIHTGEKKYKCAFCEKCFFTYSGLKSHEINHTGEQKFQCETCSKCFIHKSNFKKHLAIHDVDKKFKCTVCDKGFYRSDHLKKHLMRMHGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00387431;
- 90% Identity
- iTF_00387431;
- 80% Identity
- iTF_00387431;