Caur025732.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439475.1:64877388-64895201[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.011 1.1e+02 4.2 0.1 20 44 219 243 214 253 0.83 2 5 1.8 1.8e+04 -2.9 0.0 26 43 253 270 248 274 0.80 3 5 0.0004 4 8.8 0.1 20 43 275 298 268 306 0.91 4 5 0.0017 17 6.8 0.1 26 43 337 354 326 361 0.88 5 5 2.1e-05 0.21 12.9 0.2 26 53 365 392 360 393 0.89
Sequence Information
- Coding Sequence
- ATGCACGAAAATATTTGTCTACAATGTAATAAAGTATCTTCTGGACGGTCTCATAGACTGGTACGAGATGCGTGTGGTCACGAAAAATGTAGAGTTTGCCTATTAGAGGATGAAAATGACTGTAAACAATgtgtaaattatataaataaagaaaaaacgttaataaaagataactttaaatcaaagaaaaatatatgtgataGAAATGGTGAAATATATAATGATGTAGTGTTAAATAATCACACAGGAGTTATACAAGTAAACGGGAATGTACCAAGTACTTCTAATCTAAACGGTGAAGTAAAACTTACACCTAAATCTCATATTGAAAGAACTGTTGAAACTAGTTTTAGTGAAACTGCACAAAATTCTCTAAAAGTAgagaacaaaaatattttagggACTAAGATTAAAAAACCTGATAAACAGAAATCTGTTAAGAGGTCATACAGTTCTGTTATTATTCCGAAACATGTAAATTTAACTTTAGATCCTTTATCTTATCATTGTACTATCTGCAACAAAAGTTTTACTACAAAGACTCATGTTAAATATCATGTCTACTGTGCTGGTGCTGCTAAACCTTACAAATGTGAAGTATGTGGAAAAGAGTTCATTCTAAGAGCCCAACTTGATGTCCATTCCTACAAACATAAATCTTTTAAACCGTATACATGTCAGATATGTAAAAAATCATTCAATGACAGAAGTAAACTCACCAGACATTCAGCTGTACATACTACTGTCAAAAGTCACATCTGTTCAATTTGTGGAAATGCATACAGGAGTAAGGAGAGTTTAAAAATTCATGCTGTTATACATAAAAGTGAAAAACCGTATGCATGTAAAATTTGTAATGCAAAATTTAGTAACCAGAGTAACTTGAATAAACATGGAGTTGTGCACAAGAaagAGAAAACCCACATGTGTGATCTCTGTGGCAAGAGATACAAACAAAAATGGGCAATGACAGTCCACAAGAGTTCTCATATAAAGGGCAAAACTTTTGAATGTAGCATTTGTTTTAAAAGGTTCAATTACAGCAAAGATCTCCGGCGACACAGCCTTGTACATGTTGAAACCAAACAATACAAATGCAGTATTTGCTCAACAACATTCCGTCGGCAAGATAATCTCAGGCGACATATCAAAAATACTCATCCAGGTAAAAAGGGCGAAGTTATAAAGAACATAATACCTACCAATTTCAACATTCCGAAAACTTCAATCAATACTACCACAACTATTAAAAATTTGCCAGAAAGTAATATTAACGTTCAAAAAGACTTAAAACCCGTAGACAATCCGAATGCTATAAATGTGATAACGAGTGCCACGCCGGCTTATACTTTACCTCAGAGTAGAGCCGACGTAAAGCCAGTATCTCTTCCTTCTGCTGTTAAATCTGATTCCAGGGCTGCCGACAGTGGCAGCGGCCCAAACGGAGATGGCAACACCGCGTCGACAAGTGTCATCAACCCCCCGATCAAGCTTGCATTCAAAACGCCGGCTTTTAAGATTAACAACAATATTAACAGAGATTTCGGCGATATGCAACCCGTCGTTCACGTCCAAAATACCTACAACATGGCGGAATCAGTAGAGATCTGTCAAAAAATCATGTCAACTGACACTTCTCTACCAGCTCTTAACATCATTCGCAAAGCAGCGCCGCCAACATCGACTGAAATCTGTCAAAAAATACTCGACCCCAATTCAACCCGACCCCTACATTATGAAACTTCgttccaaaataaaaaacacgCCATGATTAAGAACATTAAGTTTAAAGTTCCCATTCAATATACCAATCAGTTTAATAATAAGGAAAGTAACAAGAAGGATGAGAGAAAGGATGACGAGGATTCGAACCCGCTCACTTTTACTGAGCTCAGGCCAGCAAGCGTCATTGTTAACAGCAATGACTTAGATTTGGGCGAGTCTGAAAATTTACATTGGAGAAGAAGGACTTCCCAAAATCTTACCTTGAGAAATATGAATTGA
- Protein Sequence
- MHENICLQCNKVSSGRSHRLVRDACGHEKCRVCLLEDENDCKQCVNYINKEKTLIKDNFKSKKNICDRNGEIYNDVVLNNHTGVIQVNGNVPSTSNLNGEVKLTPKSHIERTVETSFSETAQNSLKVENKNILGTKIKKPDKQKSVKRSYSSVIIPKHVNLTLDPLSYHCTICNKSFTTKTHVKYHVYCAGAAKPYKCEVCGKEFILRAQLDVHSYKHKSFKPYTCQICKKSFNDRSKLTRHSAVHTTVKSHICSICGNAYRSKESLKIHAVIHKSEKPYACKICNAKFSNQSNLNKHGVVHKKEKTHMCDLCGKRYKQKWAMTVHKSSHIKGKTFECSICFKRFNYSKDLRRHSLVHVETKQYKCSICSTTFRRQDNLRRHIKNTHPGKKGEVIKNIIPTNFNIPKTSINTTTTIKNLPESNINVQKDLKPVDNPNAINVITSATPAYTLPQSRADVKPVSLPSAVKSDSRAADSGSGPNGDGNTASTSVINPPIKLAFKTPAFKINNNINRDFGDMQPVVHVQNTYNMAESVEICQKIMSTDTSLPALNIIRKAAPPTSTEICQKILDPNSTRPLHYETSFQNKKHAMIKNIKFKVPIQYTNQFNNKESNKKDERKDDEDSNPLTFTELRPASVIVNSNDLDLGESENLHWRRRTSQNLTLRNMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00387510;
- 90% Identity
- iTF_00387510;
- 80% Identity
- iTF_00387510;