Caur025076.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439475.1:57101605-57106281[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00023 2.3 9.5 0.0 21 49 256 284 248 287 0.92 2 6 0.092 9.2e+02 1.2 0.1 23 45 331 353 314 356 0.73 3 6 0.0019 20 6.6 0.0 21 45 357 381 353 387 0.90 4 6 0.17 1.7e+03 0.3 0.1 26 47 447 468 432 475 0.78 5 6 0.054 5.5e+02 1.9 0.1 23 48 472 497 468 499 0.83 6 6 3e-05 0.3 12.3 0.2 22 48 500 526 495 528 0.90
Sequence Information
- Coding Sequence
- ATGGAAATGAAGATTAAcatatcttcaaaaaaattttcagCTATTTGCAGAATATGTCTTCTTCCTAATGATTTATTACCGATAACTTCAACAGACATCTTAAGCGTTTTTAAAGAAATTACAAACATAGAGgtGAAGAATGATGATGAACTCCcaaaaaatatatgcaaaattTGTATCGAACTTCTTGAGaaaattcaacattttattaaacagTCCAAAGATAATTATTCCATTCTTCTTTTAGCATTAAATGAAAAAGAATCTTATGATCCTAAAAATACATATTCTGAAGATGATTCTCCGATAAAATGTGAACAAAATCTAAATGAAGACACTAAAGACTATTTTTCAGACTCTGAAATAGAAACCACAGCGCAAATCAAAGAAAACGAAAACTTTGACTGTTCTGAATGTAGTATGAAATTTTATGCAAAGGAATTATTAATTGTACATGTCAAAGAGGAACATAATACCCATGAAGTGACCCAAAAAATACATGGTAATAGTACAAATAACTGTGATATATGCAAAGACGaatttgatTCAAACTGCGCTCTATTAAAGCATAAAAAAGCACACAATAAAAAGAagcttaaaaaatttaaatataattgtaCTGACTGCGACCGCGTTTTGACCTCACAGTCTGCATTGGATAATCATATGAAAACTCACACTGGAGACAAGCCATACAACTGTGTTTATTGCGATAAAAAATTTGCATATTCTGGCAGCCTTACTGGTCACACTCGCATTCATACAGgagAAACTCCATATTCATGTACCATTTGTAGCAAAGGTTACCACAGTTCCAGTAGTCTTAAAAAACACAAAGAAAAACAGCATTTTGATGTTGAGTGTTCTAATGAAAAGAGTAATAAAGATTATACTTTGGATGATTTAGAAAAAGTACAGTGCAAACTTTGCAATAAAATGCTAAACAAACATGGTTACGGTACTCATATGAGAATTCACACAAATGAACCAAAAGAATTTATTTGTCCATTTTGttctaaacattttaaaaaaatgtcccATTTGGATAGACATGTTAGGATTCACAcagGTGAACGTCCATTTGTTTGCGTTATCTGCAAAAAATCTTTTACGCAAGAAAGTGATCTAAAAAGACACTGGGCAATTCACTCAGGTCATAAGGAATTTCAATGCCAACACTGCGGGAAATTGTACTTCACGAAGAATGCTTTAGATACCCATATTACTGTGCATACAggctcaaaaaaattaacagtcAACAGTAACATTTGCAAGAAACCTCTGGATGATTGTGATAAACAGTCGCACTCCACTTTACCGGCTGAACAGCGATCTTTTTTGTGTACAATCTGTGGAAAATCTTTTACAGCCAGCAATAGTTTGAAAGTGCACATAAGGTTGCATACTGGAGATTGTCCATTTGTTTGTTCATATTGCGGGAAAGCTTATACGAATACAAGTAATTTAAAACGACACGTTATGAGAAATCATACTTTAGAGAAGCCTCATGTTTGTATGATCTGTCACAAGGGGTTCCATGATTCAACAAACTTGAAGCGTCATGTTAATAGGGTACATTCTGTACTTCAAATGAGAGAAAGAAATGAAGATGGTGctaatttaaatgaagaaataattcTGTAA
- Protein Sequence
- MEMKINISSKKFSAICRICLLPNDLLPITSTDILSVFKEITNIEVKNDDELPKNICKICIELLEKIQHFIKQSKDNYSILLLALNEKESYDPKNTYSEDDSPIKCEQNLNEDTKDYFSDSEIETTAQIKENENFDCSECSMKFYAKELLIVHVKEEHNTHEVTQKIHGNSTNNCDICKDEFDSNCALLKHKKAHNKKKLKKFKYNCTDCDRVLTSQSALDNHMKTHTGDKPYNCVYCDKKFAYSGSLTGHTRIHTGETPYSCTICSKGYHSSSSLKKHKEKQHFDVECSNEKSNKDYTLDDLEKVQCKLCNKMLNKHGYGTHMRIHTNEPKEFICPFCSKHFKKMSHLDRHVRIHTGERPFVCVICKKSFTQESDLKRHWAIHSGHKEFQCQHCGKLYFTKNALDTHITVHTGSKKLTVNSNICKKPLDDCDKQSHSTLPAEQRSFLCTICGKSFTASNSLKVHIRLHTGDCPFVCSYCGKAYTNTSNLKRHVMRNHTLEKPHVCMICHKGFHDSTNLKRHVNRVHSVLQMRERNEDGANLNEEIIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00387463;
- 90% Identity
- iTF_00387463;
- 80% Identity
- iTF_00387463;