Cdil035275.1
Basic Information
- Insect
- Creontiades dilutus
- Gene Symbol
- ubtf-b
- Assembly
- GCA_031894815.1
- Location
- JAVIWC010008250.1:121160-140210[-]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 4.7 6.8e+03 -1.1 0.4 35 53 448 466 442 469 0.80 2 7 6.5e-17 9.4e-14 52.9 2.1 1 68 470 537 470 538 0.98 3 7 0.00038 0.56 12.0 2.2 25 68 591 634 571 635 0.88 4 7 6e-07 0.00087 20.9 1.1 2 68 667 731 666 732 0.85 5 7 8 1.2e+04 -1.9 0.4 16 34 770 788 747 789 0.77 6 7 3.3 4.8e+03 -0.7 0.0 2 16 792 806 791 808 0.85 7 7 0.085 1.2e+02 4.4 0.6 33 68 811 846 810 847 0.92
Sequence Information
- Coding Sequence
- ATGGAGAAAACCGATaacaaaaagaagaggaaaaggaACAAAGATAAAACTATAGAAAATGGACACATTAGTAACGTCGAACGCTGTGATGTCTTAGACTTGAAACCGaaacataaaaaatcgaaacggGACgctgaatcaaaattaatttctactCCACCTACAAAAAAGGAGGAGAAGGATCTAGTGACGCCCTCGTGCGAGGCTACTCCAACTACTAAatccaaaaagaagaagaataaagaaGGGAAGTTGACAGTTGATGCTGCTGCTACTTCGTGTGTTACTGAATTGGGTAagttaaatgataaaaacaagTTAGAGTCATCGAAAGTCAAAAAGAAGAGCAAAAAAACAAAAGACGTTTCAACTCCCACTGAAGAGGTCAAACCCACGAAAAAGAAGGGAGGGAAGAAAGATAAAGTCGCAGATAAACTGAAACAAACTAAACTTACTGAATCGTTTATCGAAAAGAAAAACGATAAGAAAACAAGCAAGTCTGGTTCAGAAACTGAAAGCCCAAAGAAGTCGTTGGAGCAGATCAAAACCGTCAAGTCGCCAAAGAAAACCCCAAGTAAACCTCACTCTTCAAATGTCGAGCATTCAGCGAATGACGttaagaagaaattgaaaaaaagcaaaaaggGAGATCAAGTCTCAgacaagaaaaagaagaagaagctcaAAATGGACGTGGAGAAAGCGAACAACAACCAGAAATTTAATTTCGGCCAGCCTATTGATATCAGTGATAACTCTAGTGATTCCACTGAGCTCAAGATAGCAACGAATGAAGACGACACGTCAGAGCTGTCTTCAGAATACGATAGCTCGGACAGTGATCACATCATGAAGAACATTAAAAGTTTCAACAAGAAAGGAGCTAGTAAGAGTTCAGCGAAGAAAGAAGATGAGCCCCCACCGCCCAAAGTCAGACTGAAGATTTACTCATCATCGGATGACGAGGATGATTCCAAAGACGAAGATGGTAATGATGATGACGAGGAAGAAGACGATGATGACATCAAAGAGGACGGGGAAGATGACGATAAACTTGGAGATGAGATGGGTGATGAGGAAACTCCGAAACCTGACTCTGAGGACGTTTTCTTCAATGGCTGGACCAAGGCGGACGTCAAGCAATTACTGAACAGGATTCAAATAGAGCTTCCTAAAAACGACATCATCAAGGCGTCAACCAGAGTTAAGCAACTCAATTGGGAGAACATCAAATTTGGTTCTTATACTGCCGCCCAATGCCTCGAAAAATGGAAGTCGATTGAGAAGAAGATCCGCGGTTACAGGATACTGCAGGAGCTGTTGACAGATGCCCTGCAGTGGTTGGAACAACCTTGGACTGACTTTTATAAGGGGAACAAGAAGAAATACCAGCGTCACCCAGAAATGCCGAAAAAACCCCTGACTTCATACATGATTTTTTACCTAAATAAAAAAGACAAGATCGCCAAAGAATTCCCAGGCTTAACTCTGaCTGATCTCTCAAAAGTCATTGCCGAGAGGTTCAACAAACTTGCCCCTAATAAGAAGGCCAAGTATAATGAAATATCTCTGCAAATGAAAGAAGATTATCAAGCTAAAATGAAAGCATTTGCTGAAGCGCATCCTGCCGAAATGACTAGAATGTACAACAACAATGGGAGGGCTCGTAGGGCTCAGAATACGTTGCCTGGATGGTCAGGAGGTTATAAACCTGTAACTCCTGTCAGGCTGTTCATCGATGACAAATTAAAACAGCATCATCAGGATAGAGATGCCAATATTCAAGAGCTGCAAGCTGAATATAGACTTAAATGGAAGACAATGAGTAACAAAAAGAAGCTACCTTGGATACGATGggcgtatgaggctgaattaaaGTATCTGGAGGAGCTCAAAACATACCAAGCGGAAAATCCACATTACGAAGTTCctaaatacaaatccgttctcCTCAAAGAAGAACGTAATATTCTGGAGAAAATGCAGGGTAAACCAGATAAGCCTCCTCCTTCAGCCTACTTGCTCTACTCGAGTGTTATGTTGAAAGATCCAGAGCTTCGGAAGCTGACGCCCAAAGAAAGGATGCAAGAAACCGCTCGACTGTGGAAGAACGtccccaaaattgaaaaagaaggaTACGCGGAAAAAGTCAAACgtTTGGCTGAAATCTATAAATTGGAGTACGCTTCGTACCTGGATAGCTTGCCAGAGGACAAGCGGAAGGAGGAGCTCGCTAATAATTTACCAAAGAGGAAAGCTAAATCTTCCGAGGACGCTCCTGCAAAAGTAACTAAGAAAGCTAAAACAGAAGCAAAATCCGTTTCTAAAAAACCCCGGATGTCACTGGAGGAACTTCTGAAAAAGCAACCTACACCACCACCCAAGGACGCTTACGCTTTGTTCTGTCAAGATTACAAAAATTATCCTGAAAAAGAAATTCGAAAAAGCTGGGATGCACTTTTAGAGGCGCCTAGAAATAAGTTGGAGGCACGAGTTGAAAAGATGAAACAACAATATATTCTGGATATGAGGAAATTTTTAAAGagcCTAAATCCAGAAGATCTTCAAGTTTACTCGGCCTACAAAGCTAAATCGAATCAATCGCCGTCAATGCTTGATGTGAAACTAAGCGAGAGCGATGGCTCAGATGAGGAGGAAGGTGGAAGTGAGGAGGAAGACGATGATGAAGAAATGGAAGACGAAGCGGAACAGAAAATTGATGCTCAGACCACCAGTGCGGATGCCAGAGAGTCTGATCCGTCAGTGAATGAGAAGAAGGAAGACAGTTCTGACGAttcagatgatgatgatgatgaagatgaacaagaaGAAAAAGAAGGCGGCAAATCTTCATCTTCCTCCAGTTCTTCGGAGTCGTCGAGCGATGAAGAAGGCTCTTCATCTTCGTCAGGTTCCTCTTCCAGCTCAGATGACGAGGAAGTGGACAACGATGCTGGTGCCTTTTAA
- Protein Sequence
- MEKTDNKKKRKRNKDKTIENGHISNVERCDVLDLKPKHKKSKRDAESKLISTPPTKKEEKDLVTPSCEATPTTKSKKKKNKEGKLTVDAAATSCVTELGKLNDKNKLESSKVKKKSKKTKDVSTPTEEVKPTKKKGGKKDKVADKLKQTKLTESFIEKKNDKKTSKSGSETESPKKSLEQIKTVKSPKKTPSKPHSSNVEHSANDVKKKLKKSKKGDQVSDKKKKKKLKMDVEKANNNQKFNFGQPIDISDNSSDSTELKIATNEDDTSELSSEYDSSDSDHIMKNIKSFNKKGASKSSAKKEDEPPPPKVRLKIYSSSDDEDDSKDEDGNDDDEEEDDDDIKEDGEDDDKLGDEMGDEETPKPDSEDVFFNGWTKADVKQLLNRIQIELPKNDIIKASTRVKQLNWENIKFGSYTAAQCLEKWKSIEKKIRGYRILQELLTDALQWLEQPWTDFYKGNKKKYQRHPEMPKKPLTSYMIFYLNKKDKIAKEFPGLTLTDLSKVIAERFNKLAPNKKAKYNEISLQMKEDYQAKMKAFAEAHPAEMTRMYNNNGRARRAQNTLPGWSGGYKPVTPVRLFIDDKLKQHHQDRDANIQELQAEYRLKWKTMSNKKKLPWIRWAYEAELKYLEELKTYQAENPHYEVPKYKSVLLKEERNILEKMQGKPDKPPPSAYLLYSSVMLKDPELRKLTPKERMQETARLWKNVPKIEKEGYAEKVKRLAEIYKLEYASYLDSLPEDKRKEELANNLPKRKAKSSEDAPAKVTKKAKTEAKSVSKKPRMSLEELLKKQPTPPPKDAYALFCQDYKNYPEKEIRKSWDALLEAPRNKLEARVEKMKQQYILDMRKFLKSLNPEDLQVYSAYKAKSNQSPSMLDVKLSESDGSDEEEGGSEEEDDDEEMEDEAEQKIDAQTTSADARESDPSVNEKKEDSSDDSDDDDDEDEQEEKEGGKSSSSSSSSESSSDEEGSSSSSGSSSSSDDEEVDNDAGAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -