Clev010686.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- -
- Assembly
- GCA_901521435.1
- Location
- CABEGB010000814.1:198512-205286[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.28 54 5.4 7.9 2 23 289 311 288 311 0.97 2 18 0.03 5.7 8.5 2.2 1 23 359 381 359 381 0.97 3 18 2.4 4.5e+02 2.5 2.6 1 23 430 452 430 452 0.97 4 18 0.094 18 6.9 0.2 1 19 500 518 500 520 0.93 5 18 0.00093 0.17 13.2 1.8 1 23 561 583 561 583 0.98 6 18 0.0002 0.037 15.3 1.2 1 23 631 653 631 653 0.97 7 18 0.00056 0.11 13.9 0.1 1 23 659 681 659 681 0.97 8 18 1.2e-05 0.0022 19.2 0.2 1 23 725 748 725 748 0.96 9 18 0.0012 0.22 12.9 1.8 1 23 754 777 754 777 0.97 10 18 8.7e-06 0.0016 19.6 0.5 2 23 784 806 783 806 0.97 11 18 0.00012 0.022 16.1 0.0 1 23 814 836 814 836 0.93 12 18 0.047 8.9 7.9 0.3 1 20 893 912 893 912 0.97 13 18 0.0041 0.77 11.2 0.4 2 23 932 953 931 953 0.96 14 18 6.6e-06 0.0012 20.0 0.8 1 23 966 988 966 988 0.98 15 18 0.00027 0.051 14.9 2.9 1 23 1010 1033 1010 1033 0.93 16 18 0.0016 0.31 12.5 1.4 2 23 1093 1115 1092 1115 0.95 17 18 5.4e-05 0.01 17.1 2.4 1 23 1139 1162 1139 1162 0.93 18 18 0.0038 0.72 11.3 0.3 2 23 1254 1276 1254 1276 0.96
Sequence Information
- Coding Sequence
- ATGGACGAGGACGTGGTGGAGATCGAGAACGTGGAGGACGTCTGCAGACTGTGCCTTTCCACGGACGGGCCTAAGTCCTCGGTGTTCGCGAAGCAGGAGGATAAGAAGGAGGCCCTGTCCGGCGTGCCGATGGTCTCCAAGATCCAGGCCTGTCTGTCGATCCAGattttagcAACCGATAGGTTGTCCACGCTGATATGCACAAATTGTGTAACAATTGTTAATCAATGGCACTCCTACAAAGAGTTGTGTTTGCGTTCCCAGGACAAACTGCAACAATGGCTGGCAAATCAATTGCAATTAAATCCAGAgGTTATTACAATCAAGGATGAACCAATGGATTTTGATTATGAAGATAATGTAGAAATTATCTCGGAGACCACTAATAATTTAGAACAACcaCATTCACCAATTCAAACGGTAGAAAACCATGAGTCTAATAGTGAAAAAGTGCAAGATGTAACAGATGACAATGCGATTGATACTAACAAAGATCTTAAATCCATCCCGTCTGTAGTAGAAAAGGAGGCTGAGAAGGaagaaaatcaaaacaaagaCCCTGAACCCATCTCGTCTGCAGTAGAAAAGGAgactgagaaaaaagaaaatcaaacAGATCAGCAAGATTCTGTAGTTTTGTGTTCCATTAAAAGCGAGCCACCGGATGATGAGGATACCGATGGTACCGTAGAAGTAGAATCCACGAATAGCAGTGAGTTGAATCCCATGGCGGCCGACGAGACAGAGGACACGATCATGGAGGCCGATTCTACGCAGAAGTCTAACGCGAGTGGCGCACCGCCTAAGAAGAAATTCAGACGCGGTCCTCACACTCATTTTAGAGGAACGCGTGTTTTTAAGCAGAAATGCACGcattgcaaaatattcttgCACTCTAAATATTCGTATATGAAGCACATGAAGAGATTCCACAATAAAGAAAACGGCATTCAAAATTCGGAACAGCACGACGATGAGGAGATGGTTGAGGATCTGGAGGAAGAGCTGGCCAACATGGAAAAGGACTCACCGCTGACACAAGTCCAGCAGGACATTATTAGTCAACTGAAAACTTTCTCTTGCTACTCTTGCGAACAGACATTTAACGATCGGCGTAGCACTCTTTCTCACATACGTCAACACATGCCGGATTTGAGACCGTACACTTGTATCGCTTGCTTGACAGAATTTCCAGATCGCTCGATGTATCAATTACATTGCGAAGCTTCCTTCGAATGCGCCATGAAGATCGCTTTAGTCGTACCAAAACACGGTAACGAACAGTACTTCACGTGCAACATGTGCCTGCGCTCGATGCATGGAAGGAAGGAGTTGCTCAGCCACTTATCGAAGCACTCTGACAAACAGTACGAGGAGATGATGTCATCACCGCGAGCTCCACCCAAGCTGAAGCCGATGACACCGTTGCCACCGAAAAACAGCATTCCCGATAAAATCATTAACGGACCTTACAAGAACGGCGATCCGGCACATAATCATGCTTGCGATCTGTGCGGTATGATCTACCGTTACCGGCCCAATATGCTCAAACACAAGGACTTGTGCAAGCAAATACAACCGGAAAACAGAACATTGTACAGATGCGTGCATTGTTTCATGACGTTCCTCGTGTTTAAGAAGTTCCACTATCACGTCACGGCCGATCACAAGAAGAAGGATTTTACTTGTTCCGAATGTTATTCCAAATTCCGCTCGCCCAGTGATTTCCTGTCCCATTATGAAACTCATCGCGCGACAATACAGGCCAACCGACAAGCGTCGCAGTATGATGATACCTCGCAGAATGCAGTTCAAGCGTCACTGAAGGAACGCAATGCTAACGAAACAAGCGACAAATCGAGAATCAGTCCGCGAATTTCAAGTCAGAAGTACAGTTGCTCTCTTTGTACCCAGAAATTTTCGACGAGGGTCGAGCTAAACGAACATCAGACTCTCCATCTCAAAGTGAAGATATATTCGTGTGTCATTTGCCGCAGTATGTTCAGCAGCGCCGGCGCCCTGGAGATTCACATGAAAGATCACGGTATCGAGGACCCGAACGAAAGAAATGCCAATATTTCCTGCGTGGAATACGGCAGCTTGGATGAGGACATGAGAATCGAAAAAGATTCGGCGAATACCAGTGCCATCTCGGATCCCGGTACACAGATTCACGAGTGTGGCGAGTGCGGTAAGGTGCTATCCAATTACGCCAATCTCCGGCGACATGCTAAAATCGCTCACCGAAACTGTAAAATCTACAATTGTTTCGATTGCTCGCGTATGTTCATGCGTAAAGATTTGTACGATCAACATATGCAGATCAAACACAATTCGAAGAAAATGCTGCAGTGTCCGCAATGTCCTAAGAGTTTCGTCTTCCGAGCAAATTACAATTATCACTATCGTACCGCTCATCTTACAAATCCGCAAAATGGTTATGCTTGCGACATATGTGGCAAGGTCTTCGTCGAGGAAACGTCTTTGAAAATACACAGAGGCTGGCACAATCGTGCCAACTCCCGTCTGAGCACTCGATTTATACTAGGCAATCAAAATGCATTCAATCCGCAAAAGGAATCGAGCAACGTCGAGTCTGGTGAGAATTTAGAACGGCCGGCGAGAGCACGGAAGTCTTTCCCTAATCCTCCACCTCAATCGCCAACAAAGGGAAATTTTCAATGTCAAGTATGCAATGATAAATTCAACGACGTCACTGAGTTGAGAAACCACCTATGGGACGTCCATTGCGCCCGTAACAAACCGGAAAAAAGTTTCTCTAACGACGAGCTTCAATGCGAACTTTGTACGAATATTTTCCCCGATCATGAAACTCTGACATCTCACATGGAATGGCACAAGGCCAATCCTATTCTTAGCAACatacaaaaaacatttgtCTGCGATGTATGCGGTAAATCTTACAGTTCGAAAAAGGTTCTATGGAAGCACAAGAGGCTTCATAAGAGTACGGTTGTGGCTTCGATAAAGTTCCAATCTTTAGCCAGAAAACCGATGGCTACGCAGTTCTTGTGTAGCTTTTGTCGCAAAGTCTTCTCGAGCAACCAGTCTCTGCAACGGCACAAACTTTCTTTTCACAGTGAACCACAAGCCCAACAACGCGCGCAGCAACAATTCTACAACAGCAATCCAACATCGTCGTTCGAAGACGAGCCGAGAACAAAGCGTTTGAAATTCGAGGTCGAAAATGATAATTCGCAGGTCAAGCTGCCGCCTTTCGCCATGGACTTCGCCGGTGAGACAAGAAAGCCAGTCATGTGCCACGTTTGCAAGAAAATGTTCCCTAATATGAGCGTGCTGTACAAGCATAAGCAAATGATCCATAAAACCCGtgcaagaaaagaaagaacctCAATGCCTGAATTTCTTCCAATATCGACTCAGGATGGCAAGTTTTCATGCAACATCTGCTTCAAGAAATTCCCTCGTCTGTCGAATCTACGACAGCATTTCACGATCAAGCACAAGAAGACATTTGAAGTCGCTAGCCTGTCGATCGTCAATGATAGATTGCCAATCCCGACACCCGGGCGACCAAAAGAGCACTACATTAGTGTACAAGCCTACAATAGTGTGATGTACAGTTGCAAGCTGTGCAAGCAATGCCACGTCTTCAATAAGCAGTCCATCATGCACCATATCACCAACGTGCACAACGCAGTGTATCAGGCTGACAGCAAGACGTTCCACAGGGAGGTCAATCTGAACACTTACATAGTGAAGGATGCGATCGGAGCTACTTGTCCACGATGTGATGTCAAATATCCTAATAACAGGGCTCTGAAGATACACTATATTAAATTCCACGAGAATGCCGATTAA
- Protein Sequence
- MDEDVVEIENVEDVCRLCLSTDGPKSSVFAKQEDKKEALSGVPMVSKIQACLSIQILATDRLSTLICTNCVTIVNQWHSYKELCLRSQDKLQQWLANQLQLNPEVITIKDEPMDFDYEDNVEIISETTNNLEQPHSPIQTVENHESNSEKVQDVTDDNAIDTNKDLKSIPSVVEKEAEKEENQNKDPEPISSAVEKETEKKENQTDQQDSVVLCSIKSEPPDDEDTDGTVEVESTNSSELNPMAADETEDTIMEADSTQKSNASGAPPKKKFRRGPHTHFRGTRVFKQKCTHCKIFLHSKYSYMKHMKRFHNKENGIQNSEQHDDEEMVEDLEEELANMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYQLHCEASFECAMKIALVVPKHGNEQYFTCNMCLRSMHGRKELLSHLSKHSDKQYEEMMSSPRAPPKLKPMTPLPPKNSIPDKIINGPYKNGDPAHNHACDLCGMIYRYRPNMLKHKDLCKQIQPENRTLYRCVHCFMTFLVFKKFHYHVTADHKKKDFTCSECYSKFRSPSDFLSHYETHRATIQANRQASQYDDTSQNAVQASLKERNANETSDKSRISPRISSQKYSCSLCTQKFSTRVELNEHQTLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGSLDEDMRIEKDSANTSAISDPGTQIHECGECGKVLSNYANLRRHAKIAHRNCKIYNCFDCSRMFMRKDLYDQHMQIKHNSKKMLQCPQCPKSFVFRANYNYHYRTAHLTNPQNGYACDICGKVFVEETSLKIHRGWHNRANSRLSTRFILGNQNAFNPQKESSNVESGENLERPARARKSFPNPPPQSPTKGNFQCQVCNDKFNDVTELRNHLWDVHCARNKPEKSFSNDELQCELCTNIFPDHETLTSHMEWHKANPILSNIQKTFVCDVCGKSYSSKKVLWKHKRLHKSTVVASIKFQSLARKPMATQFLCSFCRKVFSSNQSLQRHKLSFHSEPQAQQRAQQQFYNSNPTSSFEDEPRTKRLKFEVENDNSQVKLPPFAMDFAGETRKPVMCHVCKKMFPNMSVLYKHKQMIHKTRARKERTSMPEFLPISTQDGKFSCNICFKKFPRLSNLRQHFTIKHKKTFEVASLSIVNDRLPIPTPGRPKEHYISVQAYNSVMYSCKLCKQCHVFNKQSIMHHITNVHNAVYQADSKTFHREVNLNTYIVKDAIGATCPRCDVKYPNNRALKIHYIKFHENAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00765843;
- 90% Identity
- -
- 80% Identity
- -