Clev014000.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- -
- Assembly
- GCA_901521435.1
- Location
- CABEGB010000635.1:341606-347690[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.036 6.8 8.2 3.0 1 23 435 457 435 457 0.97 2 19 0.013 2.5 9.6 0.5 2 23 491 512 490 512 0.96 3 19 0.00036 0.067 14.5 1.1 1 23 578 600 578 600 0.96 4 19 0.0003 0.056 14.8 1.2 1 23 603 625 603 625 0.98 5 19 7.3e-05 0.014 16.7 1.3 2 23 673 695 672 695 0.96 6 19 0.0055 1 10.8 3.3 1 23 701 723 701 723 0.96 7 19 0.00053 0.1 14.0 0.7 1 20 728 747 728 752 0.94 8 19 0.00016 0.031 15.6 0.9 3 23 828 848 826 848 0.96 9 19 0.00012 0.022 16.1 5.0 1 23 903 925 903 925 0.97 10 19 0.00024 0.045 15.1 0.7 1 20 930 949 930 951 0.94 11 19 0.04 7.5 8.1 0.3 2 23 962 983 962 983 0.97 12 19 6.2e-05 0.012 16.9 0.5 2 23 1022 1043 1021 1043 0.96 13 19 2.2e-05 0.0041 18.3 1.6 1 23 1048 1070 1048 1070 0.95 14 19 0.00094 0.18 13.2 1.7 1 20 1076 1095 1076 1098 0.93 15 19 3.9e-06 0.00073 20.7 0.4 1 23 1114 1136 1114 1136 0.95 16 19 4.3e-07 8.1e-05 23.7 0.6 1 23 1142 1164 1142 1164 0.98 17 19 3.4e-05 0.0065 17.7 0.2 1 23 1170 1192 1170 1192 0.97 18 19 0.02 3.8 9.0 6.9 1 23 1198 1220 1198 1220 0.96 19 19 0.0043 0.82 11.1 0.6 1 20 1226 1245 1226 1247 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAAATAAATACGTCGGGTCCGCCACAGGACGAGGACGCGATCGTGTCCGCCGTGAAGATATGCCGCGTTTGCTTGCTCAGCAACCTGATGATGCGCGACCTCTTCGTGGAGAGCGAGGTCGCGTCCTTGTCGGCGAAGGCGATGAGCTTCGCCAATGTTAAGATGATACCAGGCGATGGTTTACCTGCACAGGTGTGCTGCATGTGCGCCGACAAGTTGGAGTCGGCATATGAATTTAAGTTACAAGTAGAGCAAGCTGACAATGTTCTTCGAGGAAAGCTTGTCGGCGGAATAATAAAGGAAGAACTGTTTCTTAATGAAGTCGAAATACACTTGGACACTGAGCGGAATGACAATATAGAAGACATGAATATCGGTGCTGATTATGAATCTACTACCACAGTGTTGCCAGTAGAGTCAGCAGCTGATCTGAAAGATCACTTAATGATTTTGGAAGCTGAAAAATTGGCAGAGACAGAGGGAATGCAACAAGATTCAGAACAATATACCTCGCAAGAAATCACACAAGAAAGTATTGTGGAAGAATTGCAGCAAAACTTAGCTGGTGCAGCAGACAGTGACATGTCAGATGTTATCCATGAATCTAAGAATGAAGAACCTTCCAACGCCGAGAGTATTATTCAAAGTTGCACAGATGCAATTCCAACAGAGGAACATGATTACATTATGCAGCAACAATGTATATTGTCTGCTGAACAACTCTCCTTGCAGGAACAAATGCAAGAAAATGTAGCAGAACTTGAACAGGACACAGTGGAATGTCAAGAGATATCTGAACAAGACCAAGAAATTCAGGTTAAACAAAATCAAGAAATTGAAGTTGAGCAAATTCAAGTTCAGCAAATTCACGAGATTCAGGCTGAGCAAAACCAAGAAATTCAAACTGAGCAAAACCAAGAGATTCAAGCAGAGCAAACACAAGAGATTCAGACTAaactaagtaaaaaaattcagGCTGAAATAGATCAAGAGATTCAGGCTGAATTAGATCAAGAGATTCAGGCTGAACTAAATCAAGAAGCTCAAGCCAAGAAGGAATATCAGCAAAATCAAAATGACAAGGAGATATTCAAGGAGGAAGCACCCAAAACTGATACTAATGAACCAGTGGAACAAGAATCATTCCAGAATGAAACTAGAAGAAGTAAACGCAGATTAGCTCGTCGGACATTCGCTGAACGGAATTCCGACGAGGAGAATTATTTCGAAAATCTGAATCTTAgttctcgattgaaaaaagCGCAGGCAGATAAAGCGGAGAAGATCTTTTTCATGTGTTACTTGTGTGATAGGCAATTTCTTTCGAAGAGCGTCCTGAAAGAACATATGCATTCCCATGAAGAAGTAAGGAAAACGCTATCTCTGAAAAAATTGCCGGAAAAACTGCAGAAAAGCGTTCCCGTTGTGAAGATGCCGCCATCTGGAAAGAAAGCTAACAAGTGCCCTTATTGTGGTAAAGAGTATCTGTACATAATCTCGTTTACTAAACACATTAAACAGCACGAGCGAGAGCGGGAGGAAGCGAAGGATCCGATGCCGCTCGAAATATCGTTCCATGAGGATGAACACAGTCTAGACTTCGATAACAGCAACAAATTGGATGGCGAATGTAAGaaacgaaagagagaaggTACAGCCGACGATGTCGAGAGCGACAGCGATCAAGATAAGAGAAGAAAGCGTAGTCACGTTGAGGAGTTTGCGTGTGACAAATGTTCCGAAAAATTCGATACGAAGCGAGGCTTGCAAAAACATTCGATCACGCATGTTAGCTTCAAGTGTAGCGTGTGCAATGAGGAGTACGACACTCTGGAACAGCTGAGAAATCATCGAACAAAGCATGTTGTCGAAGGCGTACTCTCTGAACAGGATTTGGAAGAGGACATGAAGCAGATCACGACCAAGAGCGAGATTAACGATGAAGACAATAAAAACATCGAGAATGAGGAGAACGGCGAGTCTGTCGAAAACACGAAGGAACTCAAGTGCATGACGTGTTCAATTACATTCTCGCGCAAGAAAGCGTTGTCCAGACACATGGAGATGTCACACTCTAGCACCCGGTCTTACAAATGTAAGATATGCTGTCAACAATTTATACGAAAGGATCTTCTGCGTAGACATGCTGAGCAGCATGCACGAGTAACTTACAAATGTACCCAATGCAACAAGACCTTTGGTAATGAGCTCACATTGAGAAATCACTTAGTTGCCACAAATCACAAGACATTCATACATGGGCAGGAATATGATCCAAACAAACGTATAAAACGCGTGGCGGCGAGAGCAGCACAGAAGATTATCGACAAAATCAAGACGGAGGATGGTCTTGAGGATTACGATGACGATAACGATGACAATACTGATTACGATGCCAAGTTGGATGGACATTATCGCCGTAAACGCGATGCATCACCAAAGAAGTACAATTATAAGAAAGAGTTTGGGTGCGCAACCTGTAACAAGACGTACAACTCAAAGCAAGCGTTGACAAAGCACATGGAACAGCATgtaaaagaagagaaagcaGAAAAGGCAGCGGAGAAGACGGCAGAAAAGTTGAAGAAGGCCGCTttggaaaagaaagagatgcAGAAGATGAGCAATATAggcgatgatgatgatgatgacgactCTGACTTCGAGAGCGGTCTCGACTGGCCCATGGACAGTCATGAATGCAGTACGTGTAAGAAACGATACAGTACGAAGAAATCGCTTATGCGCCATCAGCTGCTACACGAGGAGCCGAACTTCGAGTGTGATATCTGTAACGTCAAGTTCTATCGCAAGGATAAGCTGAAGGCACACTATGACAAGTGTTCAGAGAAGAATCCCGATCAGGTGAGGAAGTGCAACATCTGCGGCGACAGTTTCGAAAACAATGAGATCCTGCGCGAGCACAGGGCCAAGCACGTCACCGAGGGTATCTTAACGGAGGAGGATCTGAGGGACATCGAGCCGAAATCCGAAGAAAAGAAACCAGGCGAGAAAATCGGTCGGAAGAGGAGGACCGATATTGTGGGGCTCGAGTGTACCGAATGCAACAAACAGTATACCTCCAGGAAGGGTCTGTTACGACATATTCAGGCGCACGAAGGCAAGAAATACCTATGTGACATATGCCCGAAGAAGTTTTACCGGCGAGAACACCTAAAGATCCACGTGGCCAAGCACAACATGATCAAGCCGTATAAATGCACCCGCTGCTCCAAGCGCTTTATCAAGGAAGAGCAGCTCAACAATCATCTGCCTAAGCATGATCGCCCATTGAAGAAGAGCAAGGAGACCGATAGCTCGAAGAGATTTCTCTGTGAGATCTGCAGCAAGAGCTTCACGCAATCGACGACGCTGATAGCGCATCTGCGCGCCCACAACGGTATCAAACCGTTCGTGTGCGAGGTATGCTCCAGACCATTCACCACCAACGCCTATTTGAAGATGCATatgcgcacgcacacacaggaACGTCCGTACATCTGTCAGTACTGTTCGCGAGCGTTTGCGCGCGCTGATACCTTGGCGAATCATCTGACGTCGCACACTGGCGAAGCCAAGTATCATTGCAAATGCTGTCCGAAGAACTTCCGACGATTAAAATCGCTGAAGGAACATATGTTCATTCACACGGGTCAGCGGCCTTATGAATGTCCAACTTGCGACAGGAAATTCAACAATAACGGCAGCCGCTATGCGCACAGCAAGCGCTGCAAGCAGAATCTTTTGCAGAATCAGAATCGAGCGCAGCAGATGATCCAACAAACacaacagcagcaacaacagcaacaTCAGCATCAACAGCAGCAGCCACAGCCACAACCACAGCCGCAACAAATGCAGATACAGGTGCAGCAGGCACAGCCACATCCGGTCAGGTTGCATCAAACCGCGATCGGTCAGGCACAAATAGTCAAGGCACAGAACATCAAAACGATAACTATAGCGAGACCGGCTGAGCCTACTACGACACAACAAGTTATGCAACATCAGGAGATATTAATGCCTCTAATCCTGCCGCTTACCGTCACTCTCGCCGACGTAGGCGAGGAGGTGATACTACCTGAGGGTACAAAGATATTCACCACTTCTTAA
- Protein Sequence
- MDAVEINTSGPPQDEDAIVSAVKICRVCLLSNLMMRDLFVESEVASLSAKAMSFANVKMIPGDGLPAQVCCMCADKLESAYEFKLQVEQADNVLRGKLVGGIIKEELFLNEVEIHLDTERNDNIEDMNIGADYESTTTVLPVESAADLKDHLMILEAEKLAETEGMQQDSEQYTSQEITQESIVEELQQNLAGAADSDMSDVIHESKNEEPSNAESIIQSCTDAIPTEEHDYIMQQQCILSAEQLSLQEQMQENVAELEQDTVECQEISEQDQEIQVKQNQEIEVEQIQVQQIHEIQAEQNQEIQTEQNQEIQAEQTQEIQTKLSKKIQAEIDQEIQAELDQEIQAELNQEAQAKKEYQQNQNDKEIFKEEAPKTDTNEPVEQESFQNETRRSKRRLARRTFAERNSDEENYFENLNLSSRLKKAQADKAEKIFFMCYLCDRQFLSKSVLKEHMHSHEEVRKTLSLKKLPEKLQKSVPVVKMPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKDPMPLEISFHEDEHSLDFDNSNKLDGECKKRKREGTADDVESDSDQDKRRKRSHVEEFACDKCSEKFDTKRGLQKHSITHVSFKCSVCNEEYDTLEQLRNHRTKHVVEGVLSEQDLEEDMKQITTKSEINDEDNKNIENEENGESVENTKELKCMTCSITFSRKKALSRHMEMSHSSTRSYKCKICCQQFIRKDLLRRHAEQHARVTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDDNTDYDAKLDGHYRRKRDASPKKYNYKKEFGCATCNKTYNSKQALTKHMEQHVKEEKAEKAAEKTAEKLKKAALEKKEMQKMSNIGDDDDDDDSDFESGLDWPMDSHECSTCKKRYSTKKSLMRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKSEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQAHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCSKRFIKEEQLNNHLPKHDRPLKKSKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPFVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMIQQTQQQQQQQHQHQQQQPQPQPQPQQMQIQVQQAQPHPVRLHQTAIGQAQIVKAQNIKTITIARPAEPTTTQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126152;
- 90% Identity
- -
- 80% Identity
- -