Clev005541.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- -
- Assembly
- GCA_901521435.1
- Location
- CABEGB010000870.1:153347-157272[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.8e-05 0.019 16.3 3.8 2 23 373 394 372 394 0.97 2 15 2.2e-05 0.0042 18.3 3.7 1 23 400 423 400 423 0.96 3 15 0.00018 0.034 15.5 1.7 1 23 510 532 510 532 0.97 4 15 1.2e-05 0.0023 19.1 3.6 1 23 538 560 538 561 0.96 5 15 0.00012 0.022 16.1 1.0 1 23 566 588 566 588 0.97 6 15 2.9e-06 0.00055 21.1 1.3 1 23 605 627 605 627 0.98 7 15 7.7e-07 0.00015 22.9 1.0 1 23 633 655 633 655 0.97 8 15 7.5e-06 0.0014 19.8 2.4 1 23 661 683 661 683 0.98 9 15 0.0011 0.2 13.1 0.2 1 23 689 711 689 711 0.99 10 15 3.3e-05 0.0062 17.8 1.1 1 23 717 740 717 740 0.92 11 15 1.5e-05 0.0028 18.9 1.3 1 23 746 768 746 768 0.98 12 15 0.00033 0.061 14.7 4.7 1 23 774 796 774 796 0.98 13 15 4.1e-06 0.00078 20.6 0.4 1 23 802 825 802 825 0.97 14 15 3.2e-05 0.006 17.9 1.4 1 23 831 853 831 853 0.96 15 15 7.1e-07 0.00013 23.0 4.8 1 23 859 881 859 881 0.99
Sequence Information
- Coding Sequence
- atgacaaaaataataatgaataaagaaaTGCCTTTAAGTGTGGAGTGGATGCCACAAAACACATACATGCATAATTCTTTGGATCACTTGCTGCCAGGAGATAGAAATCAGGACTTCTTAATCATAAAGCAGGAAGCAGAATTCTTTCAGAGCAGCCTGAGTTTGCAATCTGCTCAAAACAAAGTCGTGCATCTGCAAGTCTCGCCTAAAGAGAAGGATAAAGAAATCAAGCAACAGAGCAGTTATTCGGATGTATTAGCAGCAGCCTGTCAAACAGACTCTTTAAATCGGCCGTCCAAAAGATTGACTGGTGTTTCtgagaaatgtaataaaggTCGCATCGATGTGATAGAGATGACAATAGACCCAacgtttaattataaatatttttttgtgtacgAAGATCAGTTTTCCAAGTTTGTTGTACTAAAGGCTCTTTATAGCGATACAGCTAAAGAGATCGCAGTGAATCTGTTAGATGTGTTCGGGATCATAGGAGCACCGCGAGTGCTGCAGAGCGGCAATGGACGTAAGTTTGCTGAACAAGTTGTACATGAGCTACGTTTGCTGTGGAATGATTTGTTCATACTGTACGGGGACACATCTAAGTGCGAAGTTAGCTACAGGGATTTTAAGAGTTCACTCGAATCCTGGATGAGAAGAAATCCAACTCGGACCTGGTGTGAAGGGCTGAATTTCATACAGATCGTTCACAACTCGACGTATCACTGTCAGAATGGCAAGGTTCCATATGATATATTGTTTAGGCAAAATGCACGTGAGAATTTTCAAGTTATAGAAAAAGATGTGGAAGATCTGAGGGCGGAAGAAGAATGGCTCAAATATTTGTCGAATAAGAAGGACGACGATGTGGCTGCAATGACGGAAGACACGCAGAGTACATCAAATAGTACCAATCGGTGCGAAGAGAATGAAAATGTACGAGATACACAGAGTCAAAACGCGCCTTCGAAAGTCGACGATGTAAATATCTTTAGTTATGTCAACGTGAAGAATGAATCTCTAGCGAATAACGCGCGTACAATGGATTCAATATCTACAGATGAAATAGACGTGAAAAATGAATTGAAAGTCAACGAAGATACTTCATCCCTCAAATGCAGGTACTGTCAaaagcaatatataaaaatagggCATTTGAAGAACCACATGAGAACTCACAAAGCGAAACAAGTTTTCCATTGTAAGCTGTGCAATAAAACGTTTAGCGATCCGAGATTATACGCGAAGCATATGAAGCAATCACATGGACAAGATAAATTGGCTGATGAGGAAAGAGAGATACCGGTCAGTAGAAATACGAGAAACAACACCAATGCATTAGCAGCTATACGTAACAAGGAAAGATCTGTGATTCAAACAACACATGAGACTTCCGATTCcgaaacaatgaaaaataaagattgtgATTCGTTACTGaacacaaaaaaatgtaagatcAGTAAGAGCTCAAACCAAACCAGCAGACGGAAGCCTGCGGAGGGTCGCGTGTCGAAGTTACAGTATTTCCAATGTATATATTGCAAGCAAAAATTCAACTTTCCGAGTGTGTTGGAGAGACACATGCGATCACACACGAACGAACGACCATATGTGTGCGAGGTGTGTAACAAGAGCTTCAAACAATTGGGCCATCTCAGTCAGCACTCGCTGACCCATCATGATTACCGTTCATTTCAGTGCACAGTATGTGGTGTAAAGTTCGACTCCTTGGATTTGTTGAAGCAACACGCGCATTCGCATAAAGGGGAGACAACAACGACATCCAAGATACGCGATGTCTATCGTTTATTCGAATGTGACAGTTGCAAAAAAGTGTTTACAACGAAGAGCGTGCTGGAGCGACACATATTCACGCACACGCAGGAACGTCAATATGCCTGTAAGGTATGCGGCAAAAGGTTCAAGCAGGCCGGTCACGTCAAGTCGCATATGCTGGTGCACACGGGTGAGCGGCGCTTTCAGTGCACTGTGTGCTCAAAACGCTTCAGCCTGTCGAATTCGCTGAAGAAGCACATGTACGTGCACAACGGCGAGAAACCGTATCAATGCGATGTGTGCGGTGCGCGTTTCCTCGAGAAGCGCAACCTCAATGGCCACCTGCTGACGCATACCAACGAGCGTCCGTACTGCTGCAAGATCTGCGGCAAACGATACACCCTGGCGGATACTCTGCGCCGTCACGTTAGCGCGGCGCATGAGGATGGTCGTACATATCAATGCGAAATCTGTGCCAAGATGTTTAAGCAATTGGCACATTTATCGGTGCACAAGAAGGTGCACAACGACGAACGACCGTTCCAGTGTCATCTGTGCGAAAAGAATTTCAAGCACAAGAACGTGCTCAAATCGCATCTGGCGATCCACGCGAATGTACGACCGTTCGAGTGCGATGTGTGCAAGGCAACGTTCGTCAGGAAGACGAATCTGCAAACACACATCTCGTCCGCGCACATGAATGAGCGCCCATATACTTGTACTATCTGCAGCAAGCGTTTCAAACAGATTAGTCACCTGAACGGCCACGTGGTCGTACACAGCAATCTGATGCCCTACAAGTGCGATTACTGTGACCGACGCTGCAATCGGCTCGACAACTTGAAGAAGCATATGCGCCTCCATTTGAAGAACAAAGAATGA
- Protein Sequence
- MTKIIMNKEMPLSVEWMPQNTYMHNSLDHLLPGDRNQDFLIIKQEAEFFQSSLSLQSAQNKVVHLQVSPKEKDKEIKQQSSYSDVLAAACQTDSLNRPSKRLTGVSEKCNKGRIDVIEMTIDPTFNYKYFFVYEDQFSKFVVLKALYSDTAKEIAVNLLDVFGIIGAPRVLQSGNGRKFAEQVVHELRLLWNDLFILYGDTSKCEVSYRDFKSSLESWMRRNPTRTWCEGLNFIQIVHNSTYHCQNGKVPYDILFRQNARENFQVIEKDVEDLRAEEEWLKYLSNKKDDDVAAMTEDTQSTSNSTNRCEENENVRDTQSQNAPSKVDDVNIFSYVNVKNESLANNARTMDSISTDEIDVKNELKVNEDTSSLKCRYCQKQYIKIGHLKNHMRTHKAKQVFHCKLCNKTFSDPRLYAKHMKQSHGQDKLADEEREIPVSRNTRNNTNALAAIRNKERSVIQTTHETSDSETMKNKDCDSLLNTKKCKISKSSNQTSRRKPAEGRVSKLQYFQCIYCKQKFNFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDLLKQHAHSHKGETTTTSKIRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQYACKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICSKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHLKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01406725;
- 90% Identity
- -
- 80% Identity
- -