Cpal000314.1
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- -
- Assembly
- GCA_949710015.1
- Location
- OX453289.1:4026633-4040198[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.3 1.6e+02 3.0 2.0 3 21 479 497 477 501 0.91 2 11 5.5e-05 0.0038 17.6 1.7 3 23 524 545 522 545 0.96 3 11 0.0056 0.38 11.3 0.2 1 23 562 585 562 585 0.95 4 11 0.5 34 5.1 2.2 1 23 590 614 590 614 0.92 5 11 0.00046 0.031 14.7 2.4 2 23 670 692 669 692 0.94 6 11 1.5 1e+02 3.6 0.1 1 21 697 717 697 718 0.93 7 11 0.19 13 6.5 0.5 2 23 744 765 743 765 0.95 8 11 0.018 1.2 9.7 4.0 2 23 777 797 776 797 0.95 9 11 0.0016 0.11 13.0 6.8 1 23 803 826 803 826 0.97 10 11 4.1e-05 0.0028 18.0 7.1 1 23 842 865 842 865 0.97 11 11 0.03 2 9.0 0.3 1 23 873 897 873 897 0.96
Sequence Information
- Coding Sequence
- ATGGATGACACCCATCTGTGCATTAAGTGTAGTGCAACCATAGTTGGTCTGGAAAATTATATAGAGCATCGCAAACGCAATTGTTGCTTGGTTAATGTGTCACCAAATGATGCAAAACTTCCCGCCATTGTGGTAACAAGCAGTAGTGAACAAGATGTCGAAGGGTCACCATCTGTCATATCCTATGAAGGGTATCATTTTGTTGAGCCCGGGCCCGCAACCAATGCCAGTCCCGGCAACAAATCGACAAAATCTTTAACAGACAGCTATGATTTACATTATGAGTTGGGAGCCGATGTGTTCTTCTCCTCTTTGCAACTGCAAAGTGTCCAGCCATCTACTAGTGGGGGTAAAACACCTACAAGTAGCCAACCCGGTCAATTGCATCGTCCAAAATCTGTAACACAAGATTCTCATATGGAGGACAGCTGGCTTGTCAGGAATGCTACTCCACCGGTTACACAACATGACAGTGAAGGTCTCTTGAACGTTGTTACTGCCATAGAGGAAtcaaaaaaatcatttgaaaCCATTTTTCAACCAATTGTCTACGAGCACGAATCACCAGACGTTACAGAAGAAGAGGATGAAGAAGAAATGGATATAGAAATGGAAgacgatgatgacgatgaagATTATGATCCTGTGATGGAAAAGTCTATAATACAGCAACATTCCCCACCTGTAGTCCCTGTAAGTCACACAGGAGGAAAGTGGAAACCTGAAAATCGTCCCAACTTAAGCGTAGCTCACTCGCAGCTCTCACGCATATCACCAACTTGGGATGATCAAGAAGATTTGGAAGCTAATGAAGAACAGCACCCACCCCCCCATTATACTAAAGGAAAATGGATACCTGGCACTAAAGTGCAAAGGTTGGAATACAAAGAGGAGGTGGAGCTGACCAAATATACCCCCACTCAAGAATATTGGTGCAATATGTGCTGTCGTAAATTGAAGAGCAAAGCAAGCTATGAATATCATTTCAAAACCACTTATCACTTGAAGCGAGCAGAACAGGAACAACAATTGGAGAAAGCTGTTATTGAAGAATTGCCGCCAATGTTGGATATAACAAAAAGTTTATTGTTCGAAACATCGGAACAAGAGGACAATTTAGAACTTAAAAGTTCGCCCCTAAAACCTACGAAAAGAAAACGACGacgtacatattttatatgtaatctGTGTAAACGCCACATGCGTCGTCACCTCGTAGGGAAGCATTTAATTTCGCACTATCATTACCGGCATATGCAATTGCAACCTGGCGCCTccttaacatttattttggaTAACATCCACTCAGTTGTGCGGCAGTCGCCTTTTCAATGCCGCCCCTGTCACTTCTATGCTAATACCGAGGAAAATTTCCTGCTACACTGGAACTCAGATTATCATCGAAGTAATTGCGAAGGTCCTGGACTGTACTGGTGCAGTTATTGCCGGTTTGAATGCGAAGACAACAATCAAATGCATCGCCACTTATTGGGACCCGAACATAAAGAGGTTCTTTCAGCTATTAATCGTTCCGTTCCGGTTTGCATTACCAAACTAACTAATATCGATTGCTCAATATGTGGTCAACAGTTTCGCTATAATTTTGAATTGCGTCAGCATATGTGCTCACTGCATCCGTGCATTCAGTTTTCGGGCACGGCGTCTGACATTTATCAGTCACGTTTCAATTGTGATCTGTGCCCGGAAGTTTTAAACTCTAAAATTGCTTTACAACGccatgaaaaatataaacattccATCTTCAAgtatttttgttcaatttgcAATTCAGAGTTCGGTACTGCTTGCCAGGCGCGAAGTCATCGGAAGACTGCTAAACATAAAGGAAAATCCGCCGAAATATTGATCAAAGAGAATGCCGCAAAAGGAATTGAAACTTCTTcacttaataaaattaatacaacCTACATGGATTTACCTTGTACTAGTAAAATGGCCAAGGCCAGAGAGCGCCTAGCCAAGTCTTTAGAGAAggttcaaattttaaaatgcaaaGATTGTCatcaaatgtttaaaaatgatgGGGAACTAAAAATTCACCGCAACGAAAAACATTTACTTTTGGTTCATACTTGTATGAGCTGTGGAGATAGTTACGCTACAGCTCAACTCCTGGGACGTCACGCTCGTTTTTGTACCCcagcaaaatttaataaacaattcaATAAAGAAGCAGATAATGAGAAAGTTATAAGAAAGGGCAACTGGCATTGTGAAGAATGTAATTTTGTGGCCAACCTCCAGTCCGAACTCTTATACCACCAACTGTACCACATATACGGAACTATGAACAAAGACCAACTTATCCCATGTCCTCTATGCGAAAAATCATTCCGTAAGCATTCCCTACGCTGTCATATACGTCAGCATacgaatgaaaaaatatttgaatgtcATTTGTGCCAAGCGAAATATTCACGACACCACAATCTCAAGGATCACATTAACAGATCGCACAGTAATGAGTTACAGTCGCAACCGCTGGTCAAGTCGCATATTACTCACCAGTGCCATATTTGTGGCAAAGTATATAAAAGCAAGCACTCATTGAAGTTACATACACAGTCGCAACATGAAGTGGCGCCGCTGCGGCAGTTTGTGTGTCCTCTGGAGAATTGCAATTATTCTGCTATGAGTAAATCTCTACTAAAAACTCATTCACTTTCACATTCAACGACAAGCTTTAAATGCCAACAACCGAATTGTCCTTATGTAGGCAAGAGTGCATTACATTTGAAACGGTAA
- Protein Sequence
- MDDTHLCIKCSATIVGLENYIEHRKRNCCLVNVSPNDAKLPAIVVTSSSEQDVEGSPSVISYEGYHFVEPGPATNASPGNKSTKSLTDSYDLHYELGADVFFSSLQLQSVQPSTSGGKTPTSSQPGQLHRPKSVTQDSHMEDSWLVRNATPPVTQHDSEGLLNVVTAIEESKKSFETIFQPIVYEHESPDVTEEEDEEEMDIEMEDDDDDEDYDPVMEKSIIQQHSPPVVPVSHTGGKWKPENRPNLSVAHSQLSRISPTWDDQEDLEANEEQHPPPHYTKGKWIPGTKVQRLEYKEEVELTKYTPTQEYWCNMCCRKLKSKASYEYHFKTTYHLKRAEQEQQLEKAVIEELPPMLDITKSLLFETSEQEDNLELKSSPLKPTKRKRRRTYFICNLCKRHMRRHLVGKHLISHYHYRHMQLQPGASLTFILDNIHSVVRQSPFQCRPCHFYANTEENFLLHWNSDYHRSNCEGPGLYWCSYCRFECEDNNQMHRHLLGPEHKEVLSAINRSVPVCITKLTNIDCSICGQQFRYNFELRQHMCSLHPCIQFSGTASDIYQSRFNCDLCPEVLNSKIALQRHEKYKHSIFKYFCSICNSEFGTACQARSHRKTAKHKGKSAEILIKENAAKGIETSSLNKINTTYMDLPCTSKMAKARERLAKSLEKVQILKCKDCHQMFKNDGELKIHRNEKHLLLVHTCMSCGDSYATAQLLGRHARFCTPAKFNKQFNKEADNEKVIRKGNWHCEECNFVANLQSELLYHQLYHIYGTMNKDQLIPCPLCEKSFRKHSLRCHIRQHTNEKIFECHLCQAKYSRHHNLKDHINRSHSNELQSQPLVKSHITHQCHICGKVYKSKHSLKLHTQSQHEVAPLRQFVCPLENCNYSAMSKSLLKTHSLSHSTTSFKCQQPNCPYVGKSALHLKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114634;
- 90% Identity
- iTF_01115373;
- 80% Identity
- -