Cpal011895.1
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- -
- Assembly
- GCA_949710015.1
- Location
- OX453293.1:623187-641527[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00063 0.043 14.3 1.6 1 23 857 879 857 879 0.98 2 8 0.00025 0.017 15.5 1.3 1 23 911 933 911 933 0.97 3 8 0.043 2.9 8.5 4.1 1 20 941 960 941 965 0.89 4 8 0.04 2.7 8.6 0.0 3 23 972 993 971 993 0.96 5 8 0.00017 0.012 16.0 1.7 1 23 999 1021 999 1021 0.97 6 8 0.045 3 8.4 0.2 1 23 1028 1051 1028 1051 0.95 7 8 0.0022 0.15 12.6 2.4 2 20 1058 1076 1057 1079 0.91 8 8 1.4 94 3.8 10.7 1 23 1085 1108 1085 1108 0.95
Sequence Information
- Coding Sequence
- ATGGATGCACCAGCTACAAGAAGCATACAATTGGATTTTAAAACACTgGTTGATCAGTCCATAAATTTGTTGGACGGTTTGAATAAAACATCACGTTGCGATGCTTTGCACTATTTATTGCAAAGCTTAAGACATAAATTTAGGGAAGATTGCGATCAAGTAGTTCGCAAAGTCTTCGCTGGGGTGATCCCATTGCCATCCAGAAAAACAGCTGCTGTGTCATTATTAACAACATCCATAAAGGAAGAGATTAAAACTGAGGGGGACGGTGATCCTTCGACAGATTTGAATCAGAATTTTGAGAAAATCCTTTGCAAGGAGGAATTTGTGTGTCTGGATGAAGACGATGTttatgctgatgatgatggtgatacCGAAATGACGCATTCGACATTAAGGAAAAAGCCTCGTCTTAGtgtcaccaccaccaccaccgccactgTATCTCACACAGGTCCTTCAAATTGTGATCCATTGGACCTGATTCCCTCCTCTTTGATCGATGCCCGACGACTGGGCAGAGTGCACTTCGACGGCGCTGATAATAGTTTGGAACTACTGCCGCAGACTGAACTGTTTAAACGTAATGATGGCAAGGAGGAGTTATTAGATGGTAGTGATGACCTTTCTATTCATATCACCAATAAGAGTAGCAGTCACCTACTGCCCTTCTACCCGCATGAATTGGTCGAGAAGATCCTCCCGCCACGTACTTCACGGTTGGGTGAAAGTTATGTTTTCTACCCAGACAGTGATTTTACGGTACGTTTCCATCACAGTTCTGCCGCTTTTAGCGCGCGCGTCTCAAAGGAACAATTCCGCATACgattgaaaattgcattaagtTCGCATCACAAACCATTTctgatgaaattttatgatGAATTTATTTTGACCGGTCGTCTGTTGGGCACAACTCCCTCCAAGCATGTGTTATTAGCCATACGTGCTGAACGGGAACAAGAATGGAATCAACAAATTATGCGAAAACAGCTGGCGTTTAGGCAGGAGCAACAACATTTCCTTAAACAGTACCAACAGAAGTATAAGCGACATTGTATGTTGGAGAGTGGTGGCACAAATGCCTTTGAATCGGATGAAGCTGATGAGGTGTTGGACGGGGAGGTGGCTGCAGATTCTGTGGAAGCAAAGGAAATCATCaaatttgaagaaattatCGACGAGGGTGTGGAGCCCGGTGGGCGTATTATTGATGGGTTGGTCATGGAATCGGAAATAGAAGATGTATTAAGCGGTAGCGGTAACGGTACCGAAGGTACCTCTTCTATAGGCGCCAGGGGCAACAGCGACAGTTCCATTGACAATGGTTTAGACAACAAACCAATTGACATCGGTGTGCCGGATAGTGATGTTTCCAGCTTAAATATTATACGTAACGAGGCGAGTGTTTCACCGGCCAATCACTTTGGAAGCGATTTATCGTATAGTCAACACCAGTTAGGAAGCGGCAATTTAGTGATAAATGGTCTTTCAACTGCGAATAATTTATGTGGCCAGGAAGAGCAGGTCGAGGACACCATCATGGCTGATCGGTTTTCCGGGTTTGATATTGAAGAGcaacagaaaaaacaacagcaCCAGTTGGAATTTGTCCACTCTGAAGAAAACGCTGAACAGCATGATGATGCCGCGACCGCATTCAGAGCCCACAACAAGGTGGACATAATCGCCAATAGTGCGGTACCTGTTCTCCAATTGAATGTAAAGCCGGCAACGCAGCATAATATCAACAAtattatcaataataatagtgtACAGCAGAGGCAACAACACCTTCAAGTTCAGCAGCACCAACACTACCAGCAGCGGTACATGATGCAACAACAGTCGCATCATCATCAACCATTGCAGCAGAACAATCATTTTAATGCCCGCATGCCGGCAGTACGTGCCCATCCATTGGCCATGATTGGGGGTATGATGGAAAGTGCCAATCAGGAGCATCAGCAATTGCAAATGGTGCATCAGCGTTTACagcagcaccaacaacaaaatactgACAATAGTGGTATGGTAGTGAACAGCATTGAGAACATATTGGATGgggcaacaacaaataaagcGAATCCTTCAGCTGTTCaagcaccagcaccagcacTCGGTAGTAAACAAATGCAATTTATCCactatcaacaacaacatctacttcagcagcagcagcagcagcaacaacaacaacaacagcagcagcaattgCCATCACATTCGAATATGATGGCTTCTCAATTGGGTATTGGGGGCGCCCTACCCGCCCACTCCACCAAAAGCTTGGCCGCGGTTATGCAACCGCAGGAAAACTCGAATGCACAAATGTCTGCAAAAGATGCAAATACGTCATACGATCATGATGATAACGACATGTCCCAAGACGAAGAAGATGAAGATCATGAAACCAATGATACCAACGACGGCATGGAAGTTAAACCTCAATTAATTGACGGTGGCAGCAGTAGTAGTACGTCACTGCAAGCACCATCGAGTGCATCAAATCCGAGCGTAAGTGTAGGAGGTACAATACAAAGTAGttccaaaaaagaaaagcctAGTTATAGCTGTTTATTGTGTCCAAAATCCTATCGTAAACGTAAATCTCTATTGGATCACTATAAAATACATCCCGGTCACTGTCATGATTGTGGTCAACCGAATGGCACGACGCTGGAAGAAATCATTCATCATAATCGCACAGTGCATGCCAAGGAGTACCCGTTCGTGTGCGAGACATGCGGTGAGTCGTATTCACGTCGTCAACAATTTCATGCACATGTTGAATCTCACAATAAGAAAGAATTCAAAACTTATTCGTGCCATGAATGCGGCCAAAAGTTTTCCCACAAGAAGCTACATCAGCAACATTTGGACGATACGGGTCACAAGGTGGACGGTGCTATTTGTGAAGTGTGCGGTGATGAGTTTCCCTCCAAGAATGCTTTGTATCAGCATATTATCAGAGTTCACAAAAAGGATAATTTCTTCGAGTGTCACATATGCCAGAATCGATTCACGCTAAAAGCCAATCTCGAGCGACACGTTCAATTACATACCGAAATTAAGCGCACATACGTTTGTGATTTATGTGGGTCATCATATTTTACATATCCAGCGTTAAAGGATCACTACAGCAATGCTCATACGGACGCCTCTGAGTGTAAGTGTACGCTTTGCGGAAAACGATTCGGCTCTGTTAAGTCATTACAACGCCATCTGCCATCGCATTCGGAAGAACGACCAcactgttgctgttattgtgaTCAGACATTTAAATGGAAAACTCATTTAGTGCGTCATAAACAAACTGTTCACGGAAATCAGCCCTCACCGAAAAAGGTGAAACGCTTCACTAAAGAAGGGGACGAAATAGTATCCATGACGGATGTACCAGGACCACCACCAGCCAAGGTTGCTAAGAAATCAAATACCAACAaatcaaaacaacaacaaaatcaacaacagcagccCGTTTTACCACAACAATTGGGCTCTGTATCCACACCTCCACCTCTGTCCACCACACCAGGCACATCTTCCTCTTCTCAACAAGAACAATTCAATGCGGGTGTAACGAGTAATAATAGCTCACAGTCGTCAACAGCATCTACATCCCAGCACTCTTTAACCACAAACGAGCAGCAACCGAATTCCATGTATAGTCAGAACTTTAGTGCTGAGAAATTGTTAGCGGGACAAccacagcagcaacaacaacaggtaCATGTTGCGCATGGTGCGCCCCATACACAGGCACAGACTCAGGgtcagcaacaacaaagacCGACGCCACCTCCCacacaacaacatcatcaccaAACGCAAacgcagcaacaacaacagcagcatcaCCGTCATACACCCAATAGCAGTCACACACCCGACAATATAATGCCTCGTTTAAATACTTTTGCAGCGGGTTTGCCCAGCCAAGCAGCAGATACTACATTTCACCATTTCGATCAAAGTGCCGCTGGCGTATCAACACCTATTTTATCCACTAATCCGGCAGCGTATCAGCAGCATCAGATTATCAATCAGTATCACCAGCAGCAACAACTACACGCAACTGCtcaccagcagcagcagcagttaCGAAGTCACACACCGCAAAGTCCGCACCATCAGCAAGCAGCTCCTCCACCTCAAATGGCTGCGCAGCATTTTACTTCACCACATCACCATTTACAGGCTGCACAGCATCATCAGCAAATGCATCACCATCAGCAAATgttgcagcaacaacaacatcaattaCAGCAGCAACATCAGCGTCACAATCAACAGCGTTCaccacatcatcatcatcaaaccCAAGCACAACAGTTGCAGCAACAGCACCAGCAACAAGCGTCACATTCTCCACAGCATGTGGCAGCACGTTTACAGTCACCTCAACCGCAGTCACATACACCGCAACCGTCTGTAACTCATCCACAAAACCAACAGCAACCGCAATCACCCGCCcttaatcatcatcatcaacaacaacagcaacagtatcaacagcaacaacagcagcagcaacaacattgTGTGACAGACCCTTGGGGTAATATTAACTTCCTTACTAGCCATCAGcaacatcagcaacagcaGGCTCAACAACaggcacaacaacaacaacagcaacagcagcagcatcaaaGTGGCAACAATAATGTTACGTCGGATGTAAAAGATAATGCCAACAAATTCTATATTGTGGACTCTGCGGAGTTCTTGGGCTTACCCCCAATCAATGTGGGTACAAATGTGAATGCGGCAACATCGGGGACAAGCGCCAATCAAGGGAATAGCAGCCATCAacaagcacaacaacaacaacagcgacAATCTCAAGTAGAAGGTATTGTTAGCAATGCGAGTAAGAATGCGCAGTCGCCGGAACAAGCATTGGGCAGTGGCGGGGATTTAATCAGTTTTCAGAGTATGTGGCCTCAGACGAATACCGCAAATCAGATGGCATTCGCTGGTGGTAGCCAACAGTCagcacaacaacagcagcctCAGCAACCGCAACAACAATCCAATtcgcaacagcaacaacaacaacagcagcagcagcagcacgtACAACAAACACAGACAAATGGTCAAACACCGACACCCTCGACAGCAACAGCTGCCGCAGACGCtcacaattataataatattggaAGTATTTTAACAAATCTGATCGACAACAATCAGACACCAATGGAATACAACTTTGAGTTAATGCAACAGAATGCGAATGTGACTGGGCCGGGGGGTGTGGTGCCCACAGCAATAGGTCCACCACCTGTGGTGTCCCTACAACCAGCACAACAACAAtctcaacagcagcagcagcaacaacaacaccatccTCTTGCTAATTCTCCGTATGGTCTTCAAGGCGGTCCTAGCGCCGTTGGCATGATTCGTCATTCAGCTGCAGCCGGTGCGTACGGTGCAGCTGCTTCACTATATGACACTCACCATCCAGCACATCATGTGGCAACTGGCCTGGGTGAAATAAGCGAACAACAAAAGAACAGCTTCCAGCCATATCATCCACATGCAGCCCTACAACCACATGCACATGCTCACGCTCACACCCTAGCAGCGCACCCATTGGCTCCTACAGCACATCATCCTTTATCAGCCGCTTCACATTTGTTACCACACGCAGGCCATCACGTTTATGAACGTGGCAGTTACCCAGTACTGAGTGGTGAAGAACCAAAGACCGTACTGCCACCCATTAGCGACTATATGCATCAcatgcagcagcagcagcatcatgTGCAACAGCCAGATTTGCTCTATTATCCCGGTGTGAAGAATGACTGA
- Protein Sequence
- MDAPATRSIQLDFKTLVDQSINLLDGLNKTSRCDALHYLLQSLRHKFREDCDQVVRKVFAGVIPLPSRKTAAVSLLTTSIKEEIKTEGDGDPSTDLNQNFEKILCKEEFVCLDEDDVYADDDGDTEMTHSTLRKKPRLSVTTTTTATVSHTGPSNCDPLDLIPSSLIDARRLGRVHFDGADNSLELLPQTELFKRNDGKEELLDGSDDLSIHITNKSSSHLLPFYPHELVEKILPPRTSRLGESYVFYPDSDFTVRFHHSSAAFSARVSKEQFRIRLKIALSSHHKPFLMKFYDEFILTGRLLGTTPSKHVLLAIRAEREQEWNQQIMRKQLAFRQEQQHFLKQYQQKYKRHCMLESGGTNAFESDEADEVLDGEVAADSVEAKEIIKFEEIIDEGVEPGGRIIDGLVMESEIEDVLSGSGNGTEGTSSIGARGNSDSSIDNGLDNKPIDIGVPDSDVSSLNIIRNEASVSPANHFGSDLSYSQHQLGSGNLVINGLSTANNLCGQEEQVEDTIMADRFSGFDIEEQQKKQQHQLEFVHSEENAEQHDDAATAFRAHNKVDIIANSAVPVLQLNVKPATQHNINNIINNNSVQQRQQHLQVQQHQHYQQRYMMQQQSHHHQPLQQNNHFNARMPAVRAHPLAMIGGMMESANQEHQQLQMVHQRLQQHQQQNTDNSGMVVNSIENILDGATTNKANPSAVQAPAPALGSKQMQFIHYQQQHLLQQQQQQQQQQQQQQQLPSHSNMMASQLGIGGALPAHSTKSLAAVMQPQENSNAQMSAKDANTSYDHDDNDMSQDEEDEDHETNDTNDGMEVKPQLIDGGSSSSTSLQAPSSASNPSVSVGGTIQSSSKKEKPSYSCLLCPKSYRKRKSLLDHYKIHPGHCHDCGQPNGTTLEEIIHHNRTVHAKEYPFVCETCGESYSRRQQFHAHVESHNKKEFKTYSCHECGQKFSHKKLHQQHLDDTGHKVDGAICEVCGDEFPSKNALYQHIIRVHKKDNFFECHICQNRFTLKANLERHVQLHTEIKRTYVCDLCGSSYFTYPALKDHYSNAHTDASECKCTLCGKRFGSVKSLQRHLPSHSEERPHCCCYCDQTFKWKTHLVRHKQTVHGNQPSPKKVKRFTKEGDEIVSMTDVPGPPPAKVAKKSNTNKSKQQQNQQQQPVLPQQLGSVSTPPPLSTTPGTSSSSQQEQFNAGVTSNNSSQSSTASTSQHSLTTNEQQPNSMYSQNFSAEKLLAGQPQQQQQQVHVAHGAPHTQAQTQGQQQQRPTPPPTQQHHHQTQTQQQQQQHHRHTPNSSHTPDNIMPRLNTFAAGLPSQAADTTFHHFDQSAAGVSTPILSTNPAAYQQHQIINQYHQQQQLHATAHQQQQQLRSHTPQSPHHQQAAPPPQMAAQHFTSPHHHLQAAQHHQQMHHHQQMLQQQQHQLQQQHQRHNQQRSPHHHHQTQAQQLQQQHQQQASHSPQHVAARLQSPQPQSHTPQPSVTHPQNQQQPQSPALNHHHQQQQQQYQQQQQQQQQHCVTDPWGNINFLTSHQQHQQQQAQQQAQQQQQQQQQHQSGNNNVTSDVKDNANKFYIVDSAEFLGLPPINVGTNVNAATSGTSANQGNSSHQQAQQQQQRQSQVEGIVSNASKNAQSPEQALGSGGDLISFQSMWPQTNTANQMAFAGGSQQSAQQQQPQQPQQQSNSQQQQQQQQQQQHVQQTQTNGQTPTPSTATAAADAHNYNNIGSILTNLIDNNQTPMEYNFELMQQNANVTGPGGVVPTAIGPPPVVSLQPAQQQSQQQQQQQQHHPLANSPYGLQGGPSAVGMIRHSAAAGAYGAAASLYDTHHPAHHVATGLGEISEQQKNSFQPYHPHAALQPHAHAHAHTLAAHPLAPTAHHPLSAASHLLPHAGHHVYERGSYPVLSGEEPKTVLPPISDYMHHMQQQQHHVQQPDLLYYPGVKND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115349;
- 90% Identity
- iTF_01115349;
- 80% Identity
- -