Basic Information

Insect: Crataerina pallida
Gene Symbol: ush
Assembly: GCA_949710015.1
Location: OX453289.1:33041499-33046249[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.058 3.9 8.1 0.0 6 20 222 236 218 238 0.95

2 9 0.00035 0.024 15.1 0.6 1 23 291 313 291 313 0.98

3 9 0.05 3.4 8.3 1.0 2 21 345 364 345 365 0.92

4 9 0.051 3.5 8.2 2.9 2 21 750 769 749 770 0.93

5 9 0.0095 0.65 10.6 0.0 3 21 811 829 809 830 0.91

6 9 0.64 43 4.8 0.2 1 23 926 948 926 948 0.91

7 9 0.00082 0.056 13.9 0.7 1 23 954 976 954 976 0.99

8 9 0.0028 0.19 12.2 2.1 1 23 1047 1070 1047 1070 0.96

9 9 0.62 42 4.8 0.6 2 20 1193 1211 1192 1213 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.058	3.9	8.1	0.0	6	20	222	236	218	238	0.95
2	9	0.00035	0.024	15.1	0.6	1	23	291	313	291	313	0.98
3	9	0.05	3.4	8.3	1.0	2	21	345	364	345	365	0.92
4	9	0.051	3.5	8.2	2.9	2	21	750	769	749	770	0.93
5	9	0.0095	0.65	10.6	0.0	3	21	811	829	809	830	0.91
6	9	0.64	43	4.8	0.2	1	23	926	948	926	948	0.91
7	9	0.00082	0.056	13.9	0.7	1	23	954	976	954	976	0.99
8	9	0.0028	0.19	12.2	2.1	1	23	1047	1070	1047	1070	0.96
9	9	0.62	42	4.8	0.6	2	20	1193	1211	1192	1213	0.92

Sequence Information

Coding Sequence: ATGCGGCCCATATTTGATCCTAAAGATTTCAGTATCAAGAATGATGCCATAGATGTTGTTGAACGTCATTCGAATTCTACCCCACCAAATACTAGTTTAACCTGGGATACTGATGTAGAAATGGCCGATAAAAGCGTGGATAGCATTAATGCAAAAAATGTGGATACATTTCCTGACGAATCAAGTGATGAAAAATCTCTTGTATATAGAGAAATTAAAGAAGAACTGAGTAGAAGTTCACCCGATTCAAGTGAGCATAGAGAGAGTGGTTCTATGGAACGTAATGCATCTGTTTCACCCAAATACGATTCAGATATAATGACTGATGAATCGAAAGAAATAACACAAAAGACTCCACCAACAAGTTCGGATATACGAAATTCTCCATTAAGTAGCTGTAATTTACCCAAACTAAGATTAAATGCCCTTTTGGCCTCAGATCCAGCTCTAAAGCCCGATGCCAAAGATCTCAAGCTGTTACAGGAAGAAGCTCAAACTCAGCATCATAAAGGACACTTCACCCATACCACTGATAAACTAAATACCGCAATGGAGAATACTATCAATAATTTGCCTGTCGAGCCGGTGATAAAAGCGGGACCCTCTGGGGTGGAAGTTCCTCCACCACCACCTCCACGTATGAAAGTTTTCATGTGCATACCATGTGGCATTGGTTTTAGCTCTCCATCAACTTTAGAAGCTCATCAAGCTTATTATTGTTCCCACagGCATAAAGAAACAGAAGAGAACTCCACGCCTTCCTGTTCTACGACAGAGAAAACTATGACGTCGCCTTCCATTGCGACTAACTCGTTCACGAATGCTCAGAGTTCCGAGCCAACAGTTAAAGCTCACAAAACTGGGAAACAATACGCGTGTACGCAGTGTTCATATAGTGCGGATAAAAAAGTTTCCCTTAATCGTCATATGCGCATACATCAGTCATCACCAACGCCAACGCCTAATGTGAGTACTGCGAATAATGCGGTTTGCTCCCAGCTGGATGAGAATTCTAGTCAACAAATTGATCGATATTGCAGCGACTGTGACATTCGTTTTAATAATGTGAAAACCTATCGAGCTCACAAACAGCACTATTGCAATTCGCGGCGGTCGGAAGGACCCTTGACTCCGAAACTTGAAGTCTCAAGCTCGTGTCATAGCAATAAAAGCGTTAATTCGGTAACGAGTGGAATAATAAGTCCTCAGAACCGCACTAAGACTCCTACACCTGCCATGATGGCAGCTGTGGCTGCTTCACCATTCCTACTTTTGCCCACCAATCCGgttttaattataccctactCGGTGATACGTAGTGCTAGTGTAATTGGGGGTCCCTCAGCTTTTTCTTCACCTGGTGTGATTAACCCAGATACTACGTGCTTTGCTTTGGAGAATGGTAACCTTAAACCCTTGGCCACAGTGGTCAATATTAACACAACGCTTAATAATGCAACAAATCAAAGTTTGGCCAGTAACAGCCACCAATTGGTAGACAACACGCTTCATCAGACAACAACTTCCAACAGTAATGAATCGTCGGTAAAtgaaaagaatattaaatataatacagATGATTCTAGAGAGAGTACACCAAAATCTAAGGAGAGAACTTTCAGAGAGTCAACCCCACTAGACTTATCACTGCGGCGTTCGCCCATAACTACTTTGTTGCAACGTCAACGTATACATTCCGATGGCGTGGAAAGAGAAGCTGTAGCGGATATGGGAAAAGACCACACTGCGCATGATGAGAGTGGTTGCGTAACACCGGAACAAATTGTGTGCGCTCCCTCATTACCTAATAGCCCTACAATGACACCATCTCCTTGCCGCAAAACTACAAGTCCAAGAAGTTCGGGCGCATGTAGTAACTCTTCCATATCACCACCATCTACAACTGCCATGTCCATCAACCTGATAAGTAATTCTACCCATCTGTTGGAGAATCTACAATTCAGATCCATGATGCCGACTGATATATTAAATCCAATACTggctaaacaaaatttggaaTTGGCATTAAAGTTATCCGTTGCAGCAGCAGCGGTTAGTTCTTCTTCCAGTGCGATGCAATCTCACAGTTCTAATCCAGCCGAATTAGCAGCAGCTGCTGTGGCAGCGGCTACTGGTCGTGCCCAATTGCTAGGTTTGCCTGTTTTGCCACCAGTGGGTAATGCTTCGGGGGGCAATTCTATTGCTTCTGGCAATCAACcgcaaatatttgttaaacagGGCGTTTCCAAATGCAAGGAATGCAATATTGTGTTTTGTAAGTATGAGAATTATTTAGCTCACAAACAGCATTACTGTTCGTCGCGTAATCAAGATGTTGGCGATGCAGAGTCTAAGTCATCTCCAACACTAACTTTGGCAAGCACTGCCCCTGCTACTGAAAATACCCCAGTAGCGTATCAGCAATTGATATGTGCCGCTTGTGGCATTAAATACACATCATTGGACAATTTGAGAGCTCATCAAAATTACTATTGCCCGAAGGGTGTGGGGGCAGCGGCGACTGCCTCTGCCCCAGCAGCAACTGGTCAATTGCCTTTAACCAAAGAAACCAAATGCACCAAATGCAATACCGTGCACGAACTAACTTTGCCCTGTCCAATGTCTCCagttttacaacaacaacaacagcaacaacaacaacatcaacagcaacatcaacaaaagcatcaacaacaacaacaacaacatactgctttatttttatcatcGGGTGGCAATATGTCAACGGGCAGTGGAAGTAACACCCAAAACTTATACAAATGTCCATTGTGCGATGTAATGAGCTTGACGGCCACCGAAAGTCGCAAACACATGGAAACCCACGGCACCGTTAAAGCATTTCGTTGCACTATATGCGGTTATAAGGGCAACACTTTGAGGGGTATGcgtacacacatacgcatGCATGTTGATAAAAAGACGAATGATTTTAATGAAGAGCATTATATGACGTGTATACTTGAAGATGAAAACATTGAAATTCCTACAGTTGATCAATtagcaaaacaacaacaacaacaacaacatcaaaaacatttacatcAAACGTCTGCCGTAAGTGCTGCTGTGCCGACACCAgattttcaacaacaacaacaacaacaatcacaacagGTGTTTCATTGTGATATATGCAGCTATACATCCACCTATAAAGGCAACGTAttgCGCCACATGAAACTGCTGCATCCGCATGCCCTAACCAATTCACCGTCTATTTCTCCCGAGGTAGCCGCTCCAGACACAAATGACAGCCCCTCACTGGCCAGTAGCCTTAATGGTGATAATTCGCTACACAGTTTTACTATAAAAACTGAACCATTAGATAATGCGGCACCCAACCCAGCCATATCTGGTGTTATAATTAATGCGCgcgataataataattcttttatatCCAGTACGGCTCATCTGGCAACAAACAACGACATGGCAACGATGATGACAAATATTAAAACCGAGCCCATGGAGTTGGCAGTAGAATCATCGACACCGGTAAGGGGACCGCCGCCATCTACATTAAATAACACTCTGGACGAGTgtattaatcaaaaatattgtcAAAGCTGTGACATATCATTCAATTATTTGAAAACATATTTAGCTCACAAGCAATTCTATTGCAAGAATAAAATCAAACGGTCGGACGGCAGTGGTAGTCCCAGTCCAAAACCTGATAACTTGATCACGTCTATGCCATCACCCAATAATTTGctaatgcaaaaaaataaggaaaatatGCAACAGGAGGCGGCCATATGA
Protein Sequence: MRPIFDPKDFSIKNDAIDVVERHSNSTPPNTSLTWDTDVEMADKSVDSINAKNVDTFPDESSDEKSLVYREIKEELSRSSPDSSEHRESGSMERNASVSPKYDSDIMTDESKEITQKTPPTSSDIRNSPLSSCNLPKLRLNALLASDPALKPDAKDLKLLQEEAQTQHHKGHFTHTTDKLNTAMENTINNLPVEPVIKAGPSGVEVPPPPPPRMKVFMCIPCGIGFSSPSTLEAHQAYYCSHRHKETEENSTPSCSTTEKTMTSPSIATNSFTNAQSSEPTVKAHKTGKQYACTQCSYSADKKVSLNRHMRIHQSSPTPTPNVSTANNAVCSQLDENSSQQIDRYCSDCDIRFNNVKTYRAHKQHYCNSRRSEGPLTPKLEVSSSCHSNKSVNSVTSGIISPQNRTKTPTPAMMAAVAASPFLLLPTNPVLIIPYSVIRSASVIGGPSAFSSPGVINPDTTCFALENGNLKPLATVVNINTTLNNATNQSLASNSHQLVDNTLHQTTTSNSNESSVNEKNIKYNTDDSRESTPKSKERTFRESTPLDLSLRRSPITTLLQRQRIHSDGVEREAVADMGKDHTAHDESGCVTPEQIVCAPSLPNSPTMTPSPCRKTTSPRSSGACSNSSISPPSTTAMSINLISNSTHLLENLQFRSMMPTDILNPILAKQNLELALKLSVAAAAVSSSSSAMQSHSSNPAELAAAAVAAATGRAQLLGLPVLPPVGNASGGNSIASGNQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSSRNQDVGDAESKSSPTLTLASTAPATENTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGVGAAATASAPAATGQLPLTKETKCTKCNTVHELTLPCPMSPVLQQQQQQQQQHQQQHQQKHQQQQQQHTALFLSSGGNMSTGSGSNTQNLYKCPLCDVMSLTATESRKHMETHGTVKAFRCTICGYKGNTLRGMRTHIRMHVDKKTNDFNEEHYMTCILEDENIEIPTVDQLAKQQQQQQHQKHLHQTSAVSAAVPTPDFQQQQQQQSQQVFHCDICSYTSTYKGNVLRHMKLLHPHALTNSPSISPEVAAPDTNDSPSLASSLNGDNSLHSFTIKTEPLDNAAPNPAISGVIINARDNNNSFISSTAHLATNNDMATMMTNIKTEPMELAVESSTPVRGPPPSTLNNTLDECINQKYCQSCDISFNYLKTYLAHKQFYCKNKIKRSDGSGSPSPKPDNLITSMPSPNNLLMQKNKENMQQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115307;
90% Identity: iTF_01114582;
80% Identity: -