Clig000777.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- nfxl1
- Assembly
- GCA_905163465.1
- Location
- LR990977.1:10490361-10492832[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 3e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 19 0.014 2.1e+02 2.7 0.7 4 10 169 175 168 175 0.97 3 19 3.1e-07 0.0046 17.7 15.9 3 19 186 202 185 202 0.95 4 19 1.6 2.3e+04 -3.8 0.6 6 10 227 231 226 231 0.78 5 19 4.6e-07 0.0069 17.1 11.6 3 19 239 255 237 255 0.91 6 19 0.31 4.5e+03 -1.5 2.0 5 10 279 284 279 284 0.92 7 19 8.6e-10 1.3e-05 25.8 13.4 1 19 290 308 290 308 0.99 8 19 5.9e-06 0.087 13.6 16.7 3 19 345 361 344 361 0.93 9 19 0.0033 48 4.8 17.9 3 18 397 412 395 413 0.91 10 19 4.5e-10 6.6e-06 26.7 14.0 1 19 422 440 422 440 0.99 11 19 0.0074 1.1e+02 3.7 7.2 9 19 488 498 486 498 0.89 12 19 0.25 3.7e+03 -1.2 10.5 3 12 509 518 508 518 0.87 13 19 0.35 5.1e+03 -1.7 3.6 14 18 547 551 547 552 0.87 14 19 0.2 3e+03 -0.9 0.1 8 12 568 572 567 573 0.82 15 19 9.1e-06 0.13 13.0 5.3 1 11 588 598 588 599 0.97 16 19 2 3e+04 -7.4 4.2 6 10 616 620 613 620 0.66 17 19 0.00013 2 9.2 13.5 3 18 629 645 628 646 0.86 18 19 2.2e-06 0.033 14.9 13.4 1 18 687 705 687 706 0.89 19 19 0.27 4.1e+03 -1.4 0.3 7 12 721 726 715 726 0.79
Sequence Information
- Coding Sequence
- ATGGCTCGCAGATACAGAGACGCCGCCGCAAAACTACAGCAAAATGTTCAGAAACATCTGAAAGAAATGAAAGAGCTCTCATCGTCTGAAGACGAGGATGCATGCGAGTCTAGCGTCCTCGATGGTGTGTTCCAGAGCTACTGGCGCGGCGGTGGAGACACTTATATGCTGAACAGGACAAAGCACCTTCTCGAAGAAGCGATCAGCGGTCGCGCTGTTACTTGTTTAATATGTATCGGCTCGATCAAAAAATCTCACGCTATATGGACCTGCGATCACTGCTATTCATATTTCCATCTATCTTGCATACAAAAATGGGCAAATGACAGCATAAGCTTACGTAGCGAAGAAAGTCAGGGCCCAATAGCTGTAATTAAACAACAAAAAATCGAGTGGTGTTGTCCTAAGTGCCGACACTCGTATTCTAAGGATGAAATCCCGCGTAAATACCGTTGTTGTTGCGGTAAAACTGATGACCCTCAGCTACATCCATGGCTCATACCTCACACTTGTGGAGAAGTATGTGAAAAAAGGCTCTCAACTGGTGAAAACTGTAAACATAAATGTTTGCTCCTATGCCACCCTGGTCCTTGTCCTCCATGCCCACAAACTGTGAATGGGATTTGTTATTGTGAAAAAGAGCGCAAAAGAGTGCGGTGCAGTGCTGCAAAATGGTCATGTGGCCAGGTTTGTAAGAAAAGTCTTTTATGTAAAACTCACAAGTGTGAGAATATCTGTCATGAAGGTGACTGCTCCCAATGCAGCTACACCAGTGTACAACCATGCCAATGTGGTACAGAGAAAGTGAAACGACCATGCAGTGATCCATTTTGGAAATGCCAGAAGCCATGTAACAAACCATATTCCTGTGGCTACCATAAGTGTAATAAAGTCTGCCATTCAGGAAATTGTGGTTCATGCCCTAACTCTGGAATGACATCATGCCCCTGTGGGGCCAACCAGCGCTTTGTGCAATGTCCAGATGTAATGGAAACCTGCTTAGGAACTTGTAGTAAAAAGCATGAAGATTGTGAACACAACTGCCCAGAGAAATGCCACAATGGACCGTGTCCTTCTTGCCAAGTATTGATACCAAAGAAATGCCATTGTTCAACACATACCAGATCCCTACCATGCAGCAAAGAGTTTAAATGTGATACCAAATGTAGAGGGATACGTCCCTGCCGCAAGCATGGGTGTGGACGAAAATGCTGTAATGGGAATTGTCCACCATGTGAGAAAACATGTGACAAACCTCTGCAATGTGGTAGACATAAATGTACAAACATTTGTCATCGTGGTCCATGCTATCCTTGCCCTTTAGAATCAAAAGTAACCTGCAGATGTAAGGAAACCTATGTAACAGTCCCATGTGGAAGAGAACGGCAAACAAAACCACCAAAATGCAGTTTGCCTTGTAAAATCAAATACAAATGTGGCCATAGTGAAGAAAATAAACACTCCTGCCATTTTGGTGACTGTCCACATTGCAAGGCAATATGCCAGAAACAATATCCACAGTGTACTCATCACTGTAAAGCAGTCTGCCATGAGTATGTGGCAGTGCTGTTCAAACAGGTAGAAAAACCGGCCACTCCATGGGAAGTACAGCCACCAAAAACCAAAATTATGACCTTGGATTGTCCACCTTGTGACACACCAGTGCCTATTGTGTGTTATGGAGAACATGAGACAGATAATCAGCCATGCCACTCAGCTACTCGAAGACCGTGCGGGAGAGAGTGTGGACGACCACTGGCATGTGGAAACCACAAGTGCACTTTACTCTGTCATCTCTATAGCCCATCAGCTGAGTACCCAAATGTGCCTTCCAGTTGTAAACAATGTGAGAGGGAATGTTTAGTGCCTCGCCTGGAAAAATGTACCCATAAATGTTCTATTCGGGCTTGTCACCCTGGCCCGTGCCGTCCATGTGAGATACTTGAACGATTAGCCTGCCACTGTGGTGTGACAGAGATTTATTTGCGTTGCCGGGAAATATCTGCAGCAACTGAAGAGATGCTGTCATGTAAGCAACAATGCCCTAAAAACTTAAATTGTGGCCACCGCTGCCGTAACACATGTCACTCAGGACCTTGTGGCAATCAAGTCTGTACCAAAAAAGCAAAAGTATACTGTGCATGTGGTAATATAAAGAAGGAAGCTCCTTGCCACTCTGTTAAGAATGGAGACACCATAATACTATGTGACAAAACGTGTGAAGCTAAAAAGACTGCAGCTAAATTAGAGCAGGAGAAAGAAAAACAGAGATTGAAAGAGCTAGAAGAAGAGAAGAATCGCAAAGAACTAGCTGAGTATGAGTGGAAACTGAGCGGGAAAAAGAAGAAATATAAAGAGAAGAAATTGGTTCTTGATAAGAATGACAAAGGTATCTTAAAGACTTACTGGGTACCAATATTATCATTTGTAGTTATGATGCTAGCAGCTGTTTATTATATATTTTATGTGTGA
- Protein Sequence
- MARRYRDAAAKLQQNVQKHLKEMKELSSSEDEDACESSVLDGVFQSYWRGGGDTYMLNRTKHLLEEAISGRAVTCLICIGSIKKSHAIWTCDHCYSYFHLSCIQKWANDSISLRSEESQGPIAVIKQQKIEWCCPKCRHSYSKDEIPRKYRCCCGKTDDPQLHPWLIPHTCGEVCEKRLSTGENCKHKCLLLCHPGPCPPCPQTVNGICYCEKERKRVRCSAAKWSCGQVCKKSLLCKTHKCENICHEGDCSQCSYTSVQPCQCGTEKVKRPCSDPFWKCQKPCNKPYSCGYHKCNKVCHSGNCGSCPNSGMTSCPCGANQRFVQCPDVMETCLGTCSKKHEDCEHNCPEKCHNGPCPSCQVLIPKKCHCSTHTRSLPCSKEFKCDTKCRGIRPCRKHGCGRKCCNGNCPPCEKTCDKPLQCGRHKCTNICHRGPCYPCPLESKVTCRCKETYVTVPCGRERQTKPPKCSLPCKIKYKCGHSEENKHSCHFGDCPHCKAICQKQYPQCTHHCKAVCHEYVAVLFKQVEKPATPWEVQPPKTKIMTLDCPPCDTPVPIVCYGEHETDNQPCHSATRRPCGRECGRPLACGNHKCTLLCHLYSPSAEYPNVPSSCKQCERECLVPRLEKCTHKCSIRACHPGPCRPCEILERLACHCGVTEIYLRCREISAATEEMLSCKQQCPKNLNCGHRCRNTCHSGPCGNQVCTKKAKVYCACGNIKKEAPCHSVKNGDTIILCDKTCEAKKTAAKLEQEKEKQRLKELEEEKNRKELAEYEWKLSGKKKKYKEKKLVLDKNDKGILKTYWVPILSFVVMMLAAVYYIFYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932106;
- 90% Identity
- iTF_00017858; iTF_00018699; iTF_01378062;
- 80% Identity
- -