Clig024047.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990985.1:2841570-2842700[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.063 1.9e+03 -0.2 0.1 22 44 61 83 35 87 0.79 2 8 0.00013 3.8 8.4 0.1 22 51 89 118 84 121 0.87 3 8 0.18 5.4e+03 -1.7 0.0 21 43 116 138 112 141 0.74 4 8 2.1e-05 0.62 10.9 0.1 21 45 144 168 136 171 0.90 5 8 0.0012 36 5.3 0.0 18 43 169 194 167 202 0.86 6 8 0.0036 1.1e+02 3.8 0.1 5 30 212 237 209 238 0.83 7 8 0.0001 3 8.7 0.1 4 48 239 283 238 289 0.91 8 8 0.00046 14 6.6 0.0 22 49 313 341 300 344 0.82
Sequence Information
- Coding Sequence
- ATGTCAAGTGCAAAGGTTGATGACAACCACCCCTCTGTCATCAAATATGCCCCAAGGATCCAATCACCAACACCATCAAATTCTGGTGAAACAAAGATCGGTCGGCGAAAACGCGCCCCAAAAAAACCCAAGCCAAAATACTGTACCCCTAACACCAAAATCTGGAGACCATATGCCAAAGAGAAACGTTTCAAATGTGATGTATGTAAGAAAACTTTTAATGACAAAAACAGTTTACAAAGACATATTATAACCCATTCTATTGAGAGGCCGTTCACATGTGAAGTTTGTAAGAAGAGTTTTATCCAAGAAAGGCTTTTAAAAACTCATATGAGTGTGCACACGGGGGAGAAGCCGTATAAATGTAAATTATGCGATCGTAGTTTTCTCCTTCCAGTTGATTTAAAACGCCATACATTCACACATACAGGAGAAAAACCGTATATATGTGACATTTGTGATTATGGGTTTCGTCAACCGAACGATTTGAAACGGCACATGAGAAGACATACTGGCGAGAAGCCGTATGAATGCAACATATGTCATAAAAAGTTCAGCCAACTTCACGGCTTAAAGAAGCACAACTTCACACACACAGCAGAAAATCATTTTAAATGTAAAATGTGCGATAAATCATACAACCATCCAGACGGTTTGAAGAAACACATGCGGACTCACAGCGATGAAAAACCGTTCAAATGTGAGGTTTGTGAAAAGAGGTTTAAACACCCCGAGGGTTTGACAAAACATGGGTTAGTGCATACTAAAGAAAAACGATATAAGTGCGATGTTTGCGGTAAAGATTTCAGGGATACTTGTGATTTAAAAAAGCATGCACGAATCCACACTGGGGAGAAGCCGTACAAATGCCAAACTTGTGGAGTAGGCTTTAAAGAAGTTGGACAGTACAAAACTCATGTTCGGATACACACTGGAGACAAACCACACCAATGTGGTGTGTGTGTCACTACATTTTACAGTGATTCAAGCGATCTCAGAAAACATATCAACAGAAAACATATTAAGGAAAAACGTTACAAATGTGAGCAATGCGATGAACGTTTTATTTATAAGAGTACTTTGAAAACTCACGTTGCTAAGCATGAGAAAGAGAAAATTGTATTTCATTAA
- Protein Sequence
- MSSAKVDDNHPSVIKYAPRIQSPTPSNSGETKIGRRKRAPKKPKPKYCTPNTKIWRPYAKEKRFKCDVCKKTFNDKNSLQRHIITHSIERPFTCEVCKKSFIQERLLKTHMSVHTGEKPYKCKLCDRSFLLPVDLKRHTFTHTGEKPYICDICDYGFRQPNDLKRHMRRHTGEKPYECNICHKKFSQLHGLKKHNFTHTAENHFKCKMCDKSYNHPDGLKKHMRTHSDEKPFKCEVCEKRFKHPEGLTKHGLVHTKEKRYKCDVCGKDFRDTCDLKKHARIHTGEKPYKCQTCGVGFKEVGQYKTHVRIHTGDKPHQCGVCVTTFYSDSSDLRKHINRKHIKEKRYKCEQCDERFIYKSTLKTHVAKHEKEKIVFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00383915;
- 90% Identity
- iTF_00383915;
- 80% Identity
- iTF_00383915;