Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990980.1:1667228-1680410[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00055 0.052 14.7 1.6 1 23 168 190 168 190 0.99

2 11 0.011 1.1 10.6 0.2 1 23 197 219 197 219 0.98

3 11 9.4 8.9e+02 1.4 1.3 1 8 223 230 223 246 0.75

4 11 4e-06 0.00038 21.4 2.9 1 23 252 275 252 275 0.97

5 11 0.0034 0.32 12.2 0.9 2 23 283 305 282 305 0.91

6 11 1.7e-05 0.0016 19.5 0.1 1 23 318 340 318 340 0.97

7 11 1.4e-05 0.0013 19.7 0.8 1 22 346 367 346 371 0.94

8 11 0.00014 0.013 16.6 0.4 2 23 380 402 379 402 0.96

9 11 1.1e-05 0.0011 20.0 0.3 1 23 408 431 408 431 0.97

10 11 6.1e-07 5.7e-05 24.0 0.4 1 23 440 462 440 462 0.99

11 11 0.012 1.2 10.5 0.5 1 19 468 486 468 491 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00055	0.052	14.7	1.6	1	23	168	190	168	190	0.99
2	11	0.011	1.1	10.6	0.2	1	23	197	219	197	219	0.98
3	11	9.4	8.9e+02	1.4	1.3	1	8	223	230	223	246	0.75
4	11	4e-06	0.00038	21.4	2.9	1	23	252	275	252	275	0.97
5	11	0.0034	0.32	12.2	0.9	2	23	283	305	282	305	0.91
6	11	1.7e-05	0.0016	19.5	0.1	1	23	318	340	318	340	0.97
7	11	1.4e-05	0.0013	19.7	0.8	1	22	346	367	346	371	0.94
8	11	0.00014	0.013	16.6	0.4	2	23	380	402	379	402	0.96
9	11	1.1e-05	0.0011	20.0	0.3	1	23	408	431	408	431	0.97
10	11	6.1e-07	5.7e-05	24.0	0.4	1	23	440	462	440	462	0.99
11	11	0.012	1.2	10.5	0.5	1	19	468	486	468	491	0.89

Sequence Information

Coding Sequence: ATGTATGAAGAAACATTAAAATCAGTTCGCTCTCAAACCCAACCCTTAGTCAATTTATCCCAAGTGCCATTACATGTCATAGAGTTTTTGGAGGACAGCCATAGTTGTGAGGAGTCTTTTTCAGTCATAACTAAAAATGTGGATGTGAAAGTAGAAATGAAGGAAGAAGAATATTTGGAGCATCTCGAAGGAGAGTTTATTAACGGGAGTGACGAATTTTCAGAACCATTTATAAAAGATGAAGATGACTCGTTCCCCTTAAAAGCGTTACTGAAAGAAGAATTAGAACTAGAGGACATAGACAGTCTAGATCTCTTAAGCCTAAGTACAGCAACCAAAAAGAAGAAAGTAAAAAATAAAAGCAAAATCAAAACAGAAGACGGAACGGAGGATGTTAATGAAATAGACAAATCCAAAGTAAAACAGATGTACATAACCAGAGAGCAATGTATAGAAGAGAGAAAGAAAATGTTGCAGGATAAGAAATATTTGGACTGTTTATATAAATGTACTGACTGCATCAAAGGGTTCAGCTTTAAAGGCAGCTACGACAGACATATGGAAAAACATAATCAGGTAAACGGTGACTATGAATGTGACATCTGTAAACAGAGAATGGATTCCGAAGACAAACTCGTTGGCCACATGCGGTATCATTTAAACCGCTTCAAATGTGGTGAATGTGGCTTGATTCGCAACTGCCGGAGGACCATCCAAGACCACTACTCCGTGTATCACTGTCAGGATTTCTGTTATTCCTGTCCCCACTGCACCAAGACCTTCAAACGTGGCGCTTACCTGCGCAAACACGTGCGCTACGCACACACGCGCGCCGGCGGGCGGGTCACGTGCGCCTACTGCCACAGGACATACGCCAACAAGCAGGTGCTACGCTCGCACATCGTACTAAAACATTCCAAAGAAGCGGCAGTTAGTGAGATACGCAAGAAGTATGTGTGTCAAGAGTGTGGGATGGCGTTCAGGGCACCTTCTCAGCTCAAGAACCACAGCATCAAGCACTCTGACAGTAGACAATATTACTGCGTTGAATGTGACAAGAGTTTCAAATCAGATGCTTCATTAAAGAATCATTTGAAAACTACTGCCACACACATCAATTATATAGAATTACCGTTACAATGTGTACAGTGCGACAAACGCTTCGCGATACGTCGAGATTTAGACAGACACATGAACAGAGTACACCTCAACGTGAAACCGTACAGCTGTGATAAATGTGAAAAGGCTTATGTGAGCTCATGGCAGCTGAAGGACCATCAGAGACTGATCCACGAGGGTTACAAGAGACCAATGCAGTATCCTTGCCCGATGTGCGATAAAGTTTTTACTCGCAACCAAATCCTCAAGAGCCACATCCGTACCCACACCGGCGAGCGTCCGTTCCAGTGCAGCAAATGCCCAGCCCAGTTCAGCCAGTCCAGCATACTGCGGACCCACGACCGGCTCATACACCTCAAACTGACCAGAGATGGACGGCCCAAGGTCAAATAG
Protein Sequence: MYEETLKSVRSQTQPLVNLSQVPLHVIEFLEDSHSCEESFSVITKNVDVKVEMKEEEYLEHLEGEFINGSDEFSEPFIKDEDDSFPLKALLKEELELEDIDSLDLLSLSTATKKKKVKNKSKIKTEDGTEDVNEIDKSKVKQMYITREQCIEERKKMLQDKKYLDCLYKCTDCIKGFSFKGSYDRHMEKHNQVNGDYECDICKQRMDSEDKLVGHMRYHLNRFKCGECGLIRNCRRTIQDHYSVYHCQDFCYSCPHCTKTFKRGAYLRKHVRYAHTRAGGRVTCAYCHRTYANKQVLRSHIVLKHSKEAAVSEIRKKYVCQECGMAFRAPSQLKNHSIKHSDSRQYYCVECDKSFKSDASLKNHLKTTATHINYIELPLQCVQCDKRFAIRRDLDRHMNRVHLNVKPYSCDKCEKAYVSSWQLKDHQRLIHEGYKRPMQYPCPMCDKVFTRNQILKSHIRTHTGERPFQCSKCPAQFSQSSILRTHDRLIHLKLTRDGRPKVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00017574; iTF_00018393; iTF_01377741;
90% Identity: -
80% Identity: -