Basic Information

Insect: Acronicta psi
Gene Symbol: -
Assembly: GCA_946251945.1
Location: CAMIUM010000013.1:6673111-6685537[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00018 0.011 16.3 2.0 1 23 247 269 247 269 0.99

2 11 0.0031 0.19 12.4 0.4 1 23 276 298 276 298 0.98

3 11 7.1 4.4e+02 1.9 1.4 1 9 302 310 302 325 0.77

4 11 9.8e-07 6.1e-05 23.5 3.4 1 23 331 354 331 354 0.94

5 11 0.01 0.65 10.8 1.1 2 23 361 383 360 383 0.94

6 11 5e-05 0.0031 18.1 0.1 1 23 396 418 396 418 0.95

7 11 1.8e-05 0.0011 19.5 0.8 1 22 424 445 424 449 0.94

8 11 0.00017 0.011 16.4 0.4 2 23 458 480 457 480 0.96

9 11 9.7e-06 0.0006 20.3 0.3 1 23 486 509 486 509 0.97

10 11 7.7e-07 4.7e-05 23.8 0.4 1 23 518 540 518 540 0.99

11 11 0.023 1.4 9.7 0.3 1 19 546 564 546 569 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00018	0.011	16.3	2.0	1	23	247	269	247	269	0.99
2	11	0.0031	0.19	12.4	0.4	1	23	276	298	276	298	0.98
3	11	7.1	4.4e+02	1.9	1.4	1	9	302	310	302	325	0.77
4	11	9.8e-07	6.1e-05	23.5	3.4	1	23	331	354	331	354	0.94
5	11	0.01	0.65	10.8	1.1	2	23	361	383	360	383	0.94
6	11	5e-05	0.0031	18.1	0.1	1	23	396	418	396	418	0.95
7	11	1.8e-05	0.0011	19.5	0.8	1	22	424	445	424	449	0.94
8	11	0.00017	0.011	16.4	0.4	2	23	458	480	457	480	0.96
9	11	9.7e-06	0.0006	20.3	0.3	1	23	486	509	486	509	0.97
10	11	7.7e-07	4.7e-05	23.8	0.4	1	23	518	540	518	540	0.99
11	11	0.023	1.4	9.7	0.3	1	19	546	564	546	569	0.89

Sequence Information

Coding Sequence: ATGGAGGAAAAACCCGAATGGTCCAAGAACTATTGTTTTGGATGTTTGTGTGGTAACGAAGAGAGAAAACTACATACCTATACATTTCAATGTGGTCCACTTAAGGATATATTCCAGATGGATGGCATATTTCTCTGTTATCTATGTAAGAGGATGGCACAGCGCACTGAGATGTTTATACAGAATGTACAAAGTAATAGAATATTATTAGAAAACTTTCACAATGTGTTGGAAGAAACACTAAAGTCAGTGCGCACACAAACCCAACCCCTAGTCAATTTAACTAAAGTGCCATTAGATGTGATAGAGCTATTAGATAAGGACAGCCATAGTATTGAGGAGTCCTTCTCTGTTATAAGTTCTAGAAGTAGAATCAAAGATGTGCAGGTGAAGGTGGAAATGAAGGAAGAGGAATATATGGAGCATCTTGAAGGAGAGTTTATAAATGAGAGTGAAGAATTTCCAAAATCATATGTAAAAGATGAAGATGACTCTTTCCCTCTTAAAGCATTGCTCAAAGAAGAATTGGAGCTAGAAGATATAGACAGTCTGGATCTCTTGAGCCTTAGCACAACACTCAAAAAGAACAAAGTTCGGAATAAAAGTAAAATTAAAAGAGAAGATTTGAAACAAATTAAATCTGACAAACCCAGGGTGAAAACATTGTATATAACGCGAGAACAATGTATGGAGGAGCGAAAGAGAATGATGCTGGATCAGAAATATATGGATTGTGCATACAAATGTACCAACTGTGTCAAAGGGTTCAGCTTTAAAGGCAGTTATGATAGACATATGGAGAAACATAATCAGTTTATGGGTGACTATGAGTGTGAAATATGTAAACAAAGGATGGATTCAGAGGACAAGCTTGTCAGTCACATGAGGTACCATTTAATCCGGTATAAATGTGTTGACTGTGGGATAACTCGCAACTGTCGGAGGACGATCCAAGATCATTACTCTGCATTTCACTGCCAGGATTTCTGCTACTCATGTCCACACTGCCCCAAGACCTTCAAACGACAAACGTACCTGCGCAAGCACGTGAGCTACGTGCACTCGTGCCGCGAGCGCGTGCAGTGCGCGCACTGCCGCAGGTCCTACGCCAACAAGCTCGTGCTGCGCTCGCATATGATACTAAAACATTCCGAAGAGGTGTCAGCTGGTGAGATATGCAAGAAGTACGTCTGCCAGGAGTGCGGGATGGCGTTCAGGGCACCTTCCCAACTGAGGAACCACAGCGTCAAGCACTCTAACATTAGAGACTATTATTGCGTGGAATGCGATAAGAGTTTCAAATCAGATGCATCGTTGAAAAATCATTTGAAAACTACAGCTACACATGTCAATTACATAGAGTTACCATTACAATGCGTACAGTGCGACAAGCGGTTCGCGATACGTCGAGATTTAGACAGACACATGAACAGGGTACACCTCAACGTGAAGCCGTACAGCTGTGATAGATGTGATAAGGCTTATGTAAATTCATGGCAACTGAAGGAACACCAGAGATTAATCCACGAGGGTTATAAGCGACCGATGCAGTACCCGTGCCCAATGTGTGACAAAGTTTTTACTCGTAATCAGATACTCAAGAGTCACATCCGTACTCACACAGGTGAGCGGCCGTTCCAGTGCAGCAAATGTCCAGCACAGTTCAGCCAGGCCAGCATACTGCGCACCCACGACAGACTGATACACCTCAAACTAACTAGAGATGGACGGCCGAAAGTCAAATAG
Protein Sequence: MEEKPEWSKNYCFGCLCGNEERKLHTYTFQCGPLKDIFQMDGIFLCYLCKRMAQRTEMFIQNVQSNRILLENFHNVLEETLKSVRTQTQPLVNLTKVPLDVIELLDKDSHSIEESFSVISSRSRIKDVQVKVEMKEEEYMEHLEGEFINESEEFPKSYVKDEDDSFPLKALLKEELELEDIDSLDLLSLSTTLKKNKVRNKSKIKREDLKQIKSDKPRVKTLYITREQCMEERKRMMLDQKYMDCAYKCTNCVKGFSFKGSYDRHMEKHNQFMGDYECEICKQRMDSEDKLVSHMRYHLIRYKCVDCGITRNCRRTIQDHYSAFHCQDFCYSCPHCPKTFKRQTYLRKHVSYVHSCRERVQCAHCRRSYANKLVLRSHMILKHSEEVSAGEICKKYVCQECGMAFRAPSQLRNHSVKHSNIRDYYCVECDKSFKSDASLKNHLKTTATHVNYIELPLQCVQCDKRFAIRRDLDRHMNRVHLNVKPYSCDRCDKAYVNSWQLKEHQRLIHEGYKRPMQYPCPMCDKVFTRNQILKSHIRTHTGERPFQCSKCPAQFSQASILRTHDRLIHLKLTRDGRPKVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00383938;
90% Identity: -
80% Identity: -