Clig020923.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- egg
- Assembly
- GCA_905163465.1
- Location
- LR990984.1:4461259-4475828[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.094 5.6e+02 1.0 0.1 37 53 36 52 8 62 0.75 2 3 0.66 3.9e+03 -1.8 0.1 29 38 219 228 189 230 0.70 3 3 1.2e-14 7.2e-11 42.3 0.0 4 75 260 324 257 326 0.89
Sequence Information
- Coding Sequence
- ATGTTATGTTCGTGGGCGACGGGCGGCGCGAGTGGATCTACCGCGGCTCCACGCGCCTGGCGCCGCTCTACCTCGAGCTGCGCGCCGCCGAGCGCCACCGCCCGCGCCCCATGCCGCGCAGCAAGGCGCAGCCGAGGGTCGGTCACTTATTACTTGCTTAGTTTATGTTATGTTCGTGGGCGACGGGCGGCGCGAGTGGATCTACCGCGGCTCCACGCGCCTGGCGCCGCTCTACCTCGAGCTGCGCGCCGCCGAGCGCCACCGCCCGCGCCCCATGCCGCGCAGCAAGGCGCAGCCGAGGGTCGGTCACTTATTACTTGCTTAGTTTATGTTATGTTCGTGGGCGACGGGCGGCGCGAGTGGATCTACCGCGGCTCCACGCGCCTGGCGCCGCTCTACCTCGAGCTGCGCGCCGCCGAGCGCCACCGCCCGCGCCCCATGCCGCGCAGCAAGGCGCAGCCGAGGTCAAATATGCCGTACGTAGAATACACTCGGTCAGATGAACCGGAGCCCAAGCAGACGGAAGTCCAAGTCGAACAGCAACAACAACAGAATGAAGAAATTCGCCGTCAACGTGCGGTGGCTAAGAAGTCTACGAGCGTGCCTCAGCCGGCCCCCCCGCCACAACAACAGGTCGCCAGCAACCTTGACACCGTCACCAGCAGAGTTGTTTACTACACGCCGAAGAACGCGGTGAAGCCGTACCGGATGACTCCTCACAAATGCGGCCCAAAGTGCAAGAGGAGCGACGTCCTCTCTCTCAAGGAGTTGAGGACCTACAACCCGCTGGCCAAGCCACTCCTCAGTGGGTGGGAGAGACAGATAGTCCGCTACAAGGGCCACAAGGAGGTGATGTACCGCGCGCCGTGCGGGCGGCGCGTGCGCAGCCTGGCGGAGCTGCACAACTACCTGCGCCGCACGGACTCCGAGCTGCCCGTGGACCTGTTCGACTTCCACCACGCCACGCACTGCCTCGCCGAGTTTGTGCTCAACAAATGCCTCGTCGGCAAGAAGGATCTCTCCCACGGCAAAGAGAACGTGCCAGTACCCTGCGTGAACTATTACGACGAGTCATTACCAGAGTTCTGTTCCTACAACACGGAGAGGACGCCCACCGCTGGAGTACCCCTCAACTTGGACCCTGAGTTCCTGTGCGGCTGTGATTGTACTGATGATTGTCAGGATAAGACCAAATGCGCTTGTTGGAAGATGACGCTAGAGGGCGCTAGGACCATTGGGCTTGACGGCCCAAACGTGGGCTACGTGTACAAACGGCTGCCTGAACCATTACCTTCTGGGATTTATGAATGTAACTCTAGATGTAAATGCAAGCACACATGTCTCAACCGCGTGGCGCAACACCCACTGCAGTTGAAGTTACAGGTATTTAAAACGCCGAACCGCGGTTGGGGCATCCGGGCACTGAACGACGTGCCTAAAGGTTCATTCCTGTGTGTTTACGCTGGCAACCTGCTCACCGATGATGGTTTAAATGAAGGTGACGAATACTTAGCGGAGTTGGACTATATTGAGGTGGTGGAACAGATGAAGGAAGGTTACGAGGAAGACATACCGGAAGCCGACAAGAAACTAGACAAGAAAGACCAAGGGAAAGACGATGATGATGCCGACGAGCCTTCATCATCTGAAGACGACGAAGCTGCCTCCAAGTCTGACAAGGAAGATGATGACTTCAGACCTGGGTATATTGGACTAGGCGTTCAGGAGTTCAGCAAACGTCTCCGTAGACGTGAGAGATCTAAGAAAGATAAAGATGACAGAAACCAGAAAGAGAAAGATGATGGAAAACAGAAAGAGAAGGAAAAAGAAAAGGAGACCAAAGATCCGAACGGTGAAGAAGATTGCATCACTATCAGCGATGATGAAGAAGTGAGAGAACCTTCAAGATTCACGGTGCAAGCCGGTATGGGCGCCGGCGAGTTTATATCTAAATACAAATCAGTCCGCACGTTGTTTGGTAAAGACGAGGCGTGTTACATCATGGACGCTAAGGTTCAAGGCAACATCGGCAGATATCTTAATCATTCCTGTTGTCCCAATGTGTTCGTCCAGAACGTTTTCGTGGACACCCACGACCCTCGGTTCCCGTGGGTGGCGTTCTTCGCGCTCTCACACATCAAGGCGGGCACGGAGCTCACGTGGAACTACAACTACGACGTGGGTTCGGTTCCCGGGAAGATACTGTACTGCTACTGTGGCGCCGTCAATTGTAGGGGACGGCTGTTGTAA
- Protein Sequence
- MLCSWATGGASGSTAAPRAWRRSTSSCAPPSATARAPCRAARRSRGSVTYYLLSLCYVRGRRAARVDLPRLHAPGAALPRAARRRAPPPAPHAAQQGAAEGRSLITCLVYVMFVGDGRREWIYRGSTRLAPLYLELRAAERHRPRPMPRSKAQPRSNMPYVEYTRSDEPEPKQTEVQVEQQQQQNEEIRRQRAVAKKSTSVPQPAPPPQQQVASNLDTVTSRVVYYTPKNAVKPYRMTPHKCGPKCKRSDVLSLKELRTYNPLAKPLLSGWERQIVRYKGHKEVMYRAPCGRRVRSLAELHNYLRRTDSELPVDLFDFHHATHCLAEFVLNKCLVGKKDLSHGKENVPVPCVNYYDESLPEFCSYNTERTPTAGVPLNLDPEFLCGCDCTDDCQDKTKCACWKMTLEGARTIGLDGPNVGYVYKRLPEPLPSGIYECNSRCKCKHTCLNRVAQHPLQLKLQVFKTPNRGWGIRALNDVPKGSFLCVYAGNLLTDDGLNEGDEYLAELDYIEVVEQMKEGYEEDIPEADKKLDKKDQGKDDDDADEPSSSEDDEAASKSDKEDDDFRPGYIGLGVQEFSKRLRRRERSKKDKDDRNQKEKDDGKQKEKEKEKETKDPNGEEDCITISDDEEVREPSRFTVQAGMGAGEFISKYKSVRTLFGKDEACYIMDAKVQGNIGRYLNHSCCPNVFVQNVFVDTHDPRFPWVAFFALSHIKAGTELTWNYNYDVGSVPGKILYCYCGAVNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01363129;
- 90% Identity
- -
- 80% Identity
- -