Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453300.1:10826579-10834491[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0027 0.45 12.8 1.2 1 23 84 107 84 107 0.97

2 20 5.5 9.3e+02 2.4 4.6 1 23 193 215 193 215 0.97

3 20 0.0015 0.25 13.6 0.7 2 23 221 242 220 242 0.97

4 20 7.7 1.3e+03 1.9 2.3 1 23 248 270 248 271 0.93

5 20 0.34 57 6.2 3.6 2 21 509 528 508 529 0.94

6 20 4 6.7e+02 2.8 1.0 1 23 628 650 628 650 0.82

7 20 0.31 52 6.3 0.4 2 23 781 802 780 802 0.96

8 20 0.077 13 8.2 0.5 2 23 879 900 878 900 0.97

9 20 0.029 4.9 9.6 0.7 1 23 908 930 908 930 0.98

10 20 0.14 24 7.4 3.4 1 23 964 986 964 986 0.95

11 20 0.00028 0.047 15.9 4.0 1 23 994 1016 994 1016 0.99

12 20 1.2 2.1e+02 4.5 2.0 1 23 1095 1117 1095 1117 0.97

13 20 2.7 4.5e+02 3.4 0.6 1 19 1175 1193 1175 1197 0.89

14 20 0.14 24 7.4 0.2 2 23 1204 1225 1203 1225 0.96

15 20 0.018 3 10.2 0.4 1 23 1293 1315 1293 1315 0.92

16 20 0.01 1.7 11.0 1.8 1 23 1321 1343 1321 1343 0.96

17 20 0.0078 1.3 11.4 2.6 1 23 1433 1455 1433 1455 0.97

18 20 0.00019 0.033 16.4 1.4 1 23 1461 1483 1461 1483 0.99

19 20 0.37 62 6.1 2.0 1 23 1573 1595 1573 1595 0.96

20 20 0.00099 0.17 14.2 3.9 1 23 1606 1628 1606 1628 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0027	0.45	12.8	1.2	1	23	84	107	84	107	0.97
2	20	5.5	9.3e+02	2.4	4.6	1	23	193	215	193	215	0.97
3	20	0.0015	0.25	13.6	0.7	2	23	221	242	220	242	0.97
4	20	7.7	1.3e+03	1.9	2.3	1	23	248	270	248	271	0.93
5	20	0.34	57	6.2	3.6	2	21	509	528	508	529	0.94
6	20	4	6.7e+02	2.8	1.0	1	23	628	650	628	650	0.82
7	20	0.31	52	6.3	0.4	2	23	781	802	780	802	0.96
8	20	0.077	13	8.2	0.5	2	23	879	900	878	900	0.97
9	20	0.029	4.9	9.6	0.7	1	23	908	930	908	930	0.98
10	20	0.14	24	7.4	3.4	1	23	964	986	964	986	0.95
11	20	0.00028	0.047	15.9	4.0	1	23	994	1016	994	1016	0.99
12	20	1.2	2.1e+02	4.5	2.0	1	23	1095	1117	1095	1117	0.97
13	20	2.7	4.5e+02	3.4	0.6	1	19	1175	1193	1175	1197	0.89
14	20	0.14	24	7.4	0.2	2	23	1204	1225	1203	1225	0.96
15	20	0.018	3	10.2	0.4	1	23	1293	1315	1293	1315	0.92
16	20	0.01	1.7	11.0	1.8	1	23	1321	1343	1321	1343	0.96
17	20	0.0078	1.3	11.4	2.6	1	23	1433	1455	1433	1455	0.97
18	20	0.00019	0.033	16.4	1.4	1	23	1461	1483	1461	1483	0.99
19	20	0.37	62	6.1	2.0	1	23	1573	1595	1573	1595	0.96
20	20	0.00099	0.17	14.2	3.9	1	23	1606	1628	1606	1628	0.98

Sequence Information

Coding Sequence: ATGCTTCAGCAGATGTTCTCACCGAACTTCGGCGTCGGTGAAGTCGTGTCTCTCGTGCGCCCCTTCGAAGGACGATTGTGCGGTGACTCCTCTTCGGAAGCATCTTCGGACGCCGCCGCCGAGGAGGCCGACTTACCTCAGTGCAAGATCAGGCGGAATTACCATTGCACTAAGTGCAAGTTTTACACGCAAAATCCGCGCGTTTATTTAGTGCATATACGGGACGTGCATTTTGAAAAGTTTAAAATATATGACTGTCCACAGTGTGTGTATGCGTCGAGGCATCAACAAAAACTTAATAGACACATAAAAATGGTTCACGGCACTACAACTCCTGCTACGAACGTTAAAATGGAAACGGAACTACCCGCAACCGCTACGAATACTACGGAGCCGATGGAGCGCATTGAGGACATGCTCGAGGAAGTCGAGGAATGCGATGACATCGAGATAGATGTGGACGACTGCAACGAGGAGTCGTACGAGCGCTCCGCAGAAGCGAGCATGGAATGCGACAAAGTAGCGATGAATGACGACCCCGCTCTACTGGCGGCCATGAAGAATAAAGGAAAATACTTTTCGTGCAGTAAATGCAACTATGTAACTCACATAAAGGCGAGATTCACGAAGCACGTGAAGTATCATTCGATGCCGATGATCAAGTGCACAATATGCGATTTCCGTTCACCTTACAAATGGAATCTAGACCGGCATATGAAGAACCACGGCGGCAACGGAAACTTCAAGTGCTTCATGTGCAACTTCACCGCGGATATCAAGCAGAGTCTGACGTTGCACGAGCTGAATCACCACACGCCGCCCGTCGGGCAGACGGTGACGAGTCGCCGCCGCAACCGGGTGGGTGCCAGCGACGCGGCGGACGCTCTCATCCTGAAGGAGGAAGGGAGCGGCGACTCGCGGTCCTCGTTCTCGGCCTCGGACATGCAGAATGCTGAAAGAGACATCGTCAGCTGCCACAGCGACTCAAATGACGCGACATCAGACACAGGCGCTAGGAAGGACGCCGTGCAGTCCACACAAGATGGGCAAGCTCAAATGTCACCAACAGTTTCACCCGATGACTCCAAATCGCAGAAACAAAACAGGAAAGTTCCAAGACCACTCCCACCGCTCATTCCATTGCATTCATCAACCCCGACCCAAAATAAAGCGCCGAGCGGTGAACCACCGGCGAAAAAGTTTAAAGAAAATCCCAACACGGAGACACCAGAAGTGATCAAAACAAGAAAATTCGAAAACTTACCAATTGAAATTAGTGTTACACCTGTAAACAACATTCCTACAAGCAGCAAAGATACAGCTAGTCGTAAGAAAAACAACTCATTTTTCGACAAACTCAAAGAGAGATTATTGACGGAAACTGGAGGAGAAGGTTCACTTAATTGTAAAAATTGCGGTTTCGAGAGCAAATGCTTATCAGAACATTCCGTTCACGAGAAAAACTGTACCGCTCTACAGAACCGAACGACAACAAACACGTTAATATCGAGTTTGAGTTCAACTCGCTGTCAGAATTGTAGGCATAGATGTAAATCTAGTGCTGATTTATACATTCATATGAAATCATGCAGAAAGAATGAAAAACTTGAAGACGATTCCACTTTGGAAGTCAAAAGTCAAGATAGTAACGAAGGCGAGACTTCAAAACAGGAGAAAGAAGTTGAGCCACATCCTATGGAGAACGTTGTATTTGTTTGGAACAATATCGGCCATAGCTCAAACAAGTATGACACTCCACTCGACATCAACATCAATGATGACTCAACACTTCCAGAAATGAATAGAAGTTACGATCCAGAAACTGCGGACGACAACGAAAGTATGAATTTATCACCTAGTCAGGCTGTAGGAAAGAAAGTTTTCAAATGTCCGCATTGTCCGTTCTGGGCGTCGACAGCGTCAAGATTCCACGTGCATATTGTTggccatttgaataaaaaaccgTTCGAATGCTCACTCTGCAGGTACAAATCTAACTGGCGCTGGGATATTACTAAACATATCAAGCTAAAGTCGGCTCGGGACCCAGAGCATAATGAAGCCAAGGTGCTCATGACAGATGAAACAGGACGTAGGAATTACAGTAAATATAACAAATTCTTAGCAATGTCTGTGTTAAATGACAATGGGGAAACTGTGTTTCGCTATATAGACCTAAACGCATCAGCGGACGCTTCAATGGAGATCGAAGACTCCTACAATGACCTGCCAGATGGCCTTAACCAGCCTATAGATATACCGCTCGATTTACAAATGCATGGTCACGACCTGATGGATAACAGAACTTTAGATTTGAAGAAACCCAAGAAAACATTATGGAAGTGCAAGAAATGCAATTATAGAGATTCATCAAAAGAGGCTTTAGTGGAGCATGTGCGCGACCATGCGTGTGCAGAAGGGAACCAAGATCAAGCTAAAGTACCGAAAAAGCCGGAAAATACTCCGGACCCAGCGGACCTGGCGTATCGCTGTGGCCACTGCAACCAACTGTCCAACTGGAAACACGTTATACAGAGACACTGTCGCTTGAAACACGATGGAGTAATAAAAGTTATCACCACAGTTAAGCCGAAACCAGATATGGCTTTGGCATTGAGTGAAATTCCCGGTGACCAGTGTAACAAGTGCCCGTTCAAGACTCCTGACAAGAAACTGATGTACGCACACATTCAGCAGCATCAGCCATCGCCGCAATctatttttaaatgcttctTCTGCCCTTACTTCGTGAAAGACGAAAATGAATTGATAACACACCTACAGTTACACGGAGTGTCTGAACCGGAAGAGTATATTGCGAAAGCGATGGGTCGTAAATCTCCAGCGCACGAATCGGGGCCGAACGGTTCCCATACGTCGACAAAGCGACACAAATGCACGGAATGCCCGTACGAAACTAACAGCAAGTCTCAATACATGTATCACGAGCAATTCCATCGGCTCCCTGCTGACACACCTTATAAATGTCCAGAGTGCAATTACAGCGTTTCCAAGAGACATCTGCTTCATCAACATTTAAGAGTTCACGGAATCATGACTAAGAAAGTAGAAACAGAAGCAGAGTTGGAAGCAAAATTAGATACTAGAATTGAATACTCCGTCAATCTAGACGAAATACCTTTTGTTTGGGTTTCCGCCAAAAATGAGTTCCACAAAATGTTTAAATGTCGCTATTGTTCTTATGTGAACtcacaaaaatgtaaaattccGAACCACGAAAATATTCACTGCATAGTGTTTGAAAGCAGTGACGTCAGGGTCTTCAAGTGTTTAGAGTGCAAGTTTACGTGTGACAACGCCATACGGCTAGCCGAGCATTCCAAAAGCCACGGTGAAATATACGGTCGTATTTACTGTCCTGTAGAATCTGATGTCCCGGATGAAGAACAAATTGCTAAACTGCGAAAAGTCATTGAAATGGAGAAAAACACCGTAATGGAAAGTCCACCTAAAGAAGAAAAATATACCATAATAGGCGAAAACAATGAAACGAAAATTCTATTCTTTTGCCAAATGTGTCCATCTAGATTTTTCGGTGCAGAAGAACTTAAAATTCATGATAGGTTCCATGACTTATCGTTTCCAAATAAATGTAAACATTGTGAATTTTCTGTTCCGGAAGAAAGTGAGCTGGCTTCTCATGTCGCTGTTCATACAGACGAATACTATACTAAAACCAAAATGTTGAGATTCACACATAACTCACATGGTGGTCATAAGCAGCCCAGCCTAGAAAGAGCACAGTCTGATGATGCATCAGATATAACGTGGGTGGTTTCATGTCCGGGCAAAAACTATGACAATGAGTCTTCTACTATTAAGCGACCCCATGATGCGAAACCGACTCCTAAGCAATATCTCTGCAAAGAGTGTCCAGCTAAATTCTTCAAGAGTTCTGCTCTAAACTATCATTTGGGACTACACGGTGGCGAGGGTGAACATAAGTGCAAAAAATGCACTTATTCTGTAAAGAACATAGGTAATTTGGCAAAACATGAATTGTTACATGAGAATGAAGGCAAGGCCTCAACGTGTGACTACGAATCCGGTGAGGACATGGACTACAAGAATATCCCACTCTCGGGTACTGATCTATTTCAAAGGAAGACTGAAGCTCAAAAGCGTGTACTTAACGATAAGGATAAGTTAGTGAAACCAAATGATCATTTTCCGCCAGTTTTACAAGCTGATCCTCAGTTCGGATATTTGATGCATGGAAATCCTGAATTCATTTATCCAACTTACTTGAAAAACGGACGTCAAAAAGAAAAACGCTACAAGTGCCACAAATGTCCATCTGCTTTCGAGAAAAGGGAACAGTATAAAATACATTTATCACTGCATGGCTCAAAGCAAAGATACAAATGTGAGCTTTGTGACTATTCTGTCAAGTACTACGCTAATTATGTCCAACATATGAGGAAGCACCAGATGAACGATGAAGCGCAAGCCGAAAGAAAGAAGATCAGCAACGGACTGGTCGAGTCTGAACCCGTTGAAGACAAACATGAAGATAGTGATAacataaaactagcaataaaaaCAATGCCAAGGGGCGTGCCAAAAAGTGATTTCCAACAGTTTTCGATACGTGACCAACAAACGCTTAGAATTTTACAACGCAGGCGTTCCATAAATGGTAATAAAGAACAATCTTCTCCAGCAGAAGTATCGCCTACAAAAGACAGAAAATTGCACATGTGTTTACTATGCCCATACACAAATCAACGACAAGACGCTTTGAATAATCATTACAGAAGACATGACGAAAATGATGTTCTCAATTCAGGAAGTCATAAATGCTCTTACTGTGACCTGGTTGTGGTGCAGTCACATTTCTTACGGGATCACATGAAAACTCATTTTCACTATCAAAAAAATCTTACACCCGAATGTTACGTGGCGAATGAAGACGTAACCTTCACTTTAACTAAAGAAGACGGAGATGAAACGTCGGATCTCAAATTAGATGTACACAACTCAAGTCTTAAATGCAATGATGAAAAGTTATTTGTAAAAATACAGACAGGAGAACTCATAGTAGAATAA
Protein Sequence: MLQQMFSPNFGVGEVVSLVRPFEGRLCGDSSSEASSDAAAEEADLPQCKIRRNYHCTKCKFYTQNPRVYLVHIRDVHFEKFKIYDCPQCVYASRHQQKLNRHIKMVHGTTTPATNVKMETELPATATNTTEPMERIEDMLEEVEECDDIEIDVDDCNEESYERSAEASMECDKVAMNDDPALLAAMKNKGKYFSCSKCNYVTHIKARFTKHVKYHSMPMIKCTICDFRSPYKWNLDRHMKNHGGNGNFKCFMCNFTADIKQSLTLHELNHHTPPVGQTVTSRRRNRVGASDAADALILKEEGSGDSRSSFSASDMQNAERDIVSCHSDSNDATSDTGARKDAVQSTQDGQAQMSPTVSPDDSKSQKQNRKVPRPLPPLIPLHSSTPTQNKAPSGEPPAKKFKENPNTETPEVIKTRKFENLPIEISVTPVNNIPTSSKDTASRKKNNSFFDKLKERLLTETGGEGSLNCKNCGFESKCLSEHSVHEKNCTALQNRTTTNTLISSLSSTRCQNCRHRCKSSADLYIHMKSCRKNEKLEDDSTLEVKSQDSNEGETSKQEKEVEPHPMENVVFVWNNIGHSSNKYDTPLDININDDSTLPEMNRSYDPETADDNESMNLSPSQAVGKKVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCRYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMSVLNDNGETVFRYIDLNASADASMEIEDSYNDLPDGLNQPIDIPLDLQMHGHDLMDNRTLDLKKPKKTLWKCKKCNYRDSSKEALVEHVRDHACAEGNQDQAKVPKKPENTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDMALALSEIPGDQCNKCPFKTPDKKLMYAHIQQHQPSPQSIFKCFFCPYFVKDENELITHLQLHGVSEPEEYIAKAMGRKSPAHESGPNGSHTSTKRHKCTECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIMTKKVETEAELEAKLDTRIEYSVNLDEIPFVWVSAKNEFHKMFKCRYCSYVNSQKCKIPNHENIHCIVFESSDVRVFKCLECKFTCDNAIRLAEHSKSHGEIYGRIYCPVESDVPDEEQIAKLRKVIEMEKNTVMESPPKEEKYTIIGENNETKILFFCQMCPSRFFGAEELKIHDRFHDLSFPNKCKHCEFSVPEESELASHVAVHTDEYYTKTKMLRFTHNSHGGHKQPSLERAQSDDASDITWVVSCPGKNYDNESSTIKRPHDAKPTPKQYLCKECPAKFFKSSALNYHLGLHGGEGEHKCKKCTYSVKNIGNLAKHELLHENEGKASTCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLNDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKISNGLVESEPVEDKHEDSDNIKLAIKTMPRGVPKSDFQQFSIRDQQTLRILQRRRSINGNKEQSSPAEVSPTKDRKLHMCLLCPYTNQRQDALNNHYRRHDENDVLNSGSHKCSYCDLVVVQSHFLRDHMKTHFHYQKNLTPECYVANEDVTFTLTKEDGDETSDLKLDVHNSSLKCNDEKLFVKIQTGELIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00448640;
90% Identity: -
80% Identity: -