Clat053739.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453321.1:17187559-17206550[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0001 0.017 17.3 1.4 1 23 235 257 235 257 0.99 2 12 0.21 35 6.9 1.3 1 21 264 284 264 287 0.89 3 12 4 6.8e+02 2.8 2.3 1 23 291 313 291 313 0.95 4 12 0.042 7.1 9.1 2.0 1 23 318 340 318 341 0.94 5 12 0.00018 0.031 16.5 0.1 1 23 345 368 345 368 0.98 6 12 0.0028 0.47 12.8 0.5 2 20 381 399 380 401 0.95 7 12 4.1e-06 0.00068 21.7 0.2 2 23 409 430 408 430 0.97 8 12 0.024 4 9.8 3.8 2 23 437 459 436 459 0.94 9 12 1.9e-05 0.0033 19.6 0.9 2 23 479 500 478 500 0.97 10 12 2.8e-05 0.0047 19.1 1.9 1 23 506 528 506 528 0.98 11 12 3.4e-05 0.0057 18.8 1.9 1 23 534 556 534 556 0.94 12 12 5.4e-06 0.00092 21.3 5.3 1 23 562 585 562 585 0.98
Sequence Information
- Coding Sequence
- ATGGTAGAATTATTAGCTTGTCGTGTTTGCTTGTGTACAAACGTTAAACTAtacaatatatataaatatcaaTTGCATTTCGCGTACGAAAGTCTTACTGGTTGTAAGGTCTTACCACAAGATGGGTGTCCCCAATATGTTTGTCACGTCTGCAGCACTTTATTGCTTAAGTGGTTGTCATTCAAAAACATCTGTCAGAAGAGCCAGGAGAAATTAAAGTATGCATATGGACAAAATAGATTGataACAACGGAATACATTACAAGCTTACAATTAAGTACACCATTTTTAGGCAAATTTTCTACCAGTCGTAGTAGCATATCATTAACATACAATGAAGATAAAGAAATCAAAGATGAAGTATACAATGATAACGACAACACCTTCAACGATGACACAGAAACATTCGCTAACGATATAGACTTCAATAACGATTCTGACGatttcaatgataaaaaagtGAAATCAGAAAACTCTTCAAGCGACGAAGAACCGTTAGCAAGCAAAAAAGTTAAGAAGAAAAAGAGAAAGGTGAAAAAAATTAATGTTAAAAGTGAGAAACAAGATAACGGGAATCAGGaaaacgatgatgatgatgataacttagaaaattataagattgaaCTGAGGATTTTAACGAAGGAACAGCAGATAGAGGAGATTGAGGCTAGAATGAAGTCGCTTAACTATTTGCATTCATTCTACAAATGTGAAAAGTGTTACAAGGGTTTTATGTCAGCGGCTACATACAAGAATCATATGATAAGGCATGATCCGTCGTCCGGAAGTCACGTGTGCGAGATCTGTCACACAAGATGGCGGACTTCCGGTTCGCTACACACGCACGTTGTGGCGGCGCATGAAAGGAAATTTGTGTGCAAGCTTTGTGCTCATGTAAGCAACTCTAAATATAAAGCAAAAGAACATTTCAAGTGGCACAGCGGACACAAGTTTGTATGCGATCTGTGCGGGGCTTCATTTGAAAAGTCCACGAGTCACCTAACACACGTTCGCATACATCACCCCTCGAAGTACAGCTGTGAAGTGTgcggcgagtcgttcatagggGAAAATGGTCTCAAAATGCATAAGCGTAAGGCTCATAGGGGCGCGGAGGATGAAGAAAAGAAGGAATCATCTAGATGTCCAAGGTGCGATGTCAACTTCCATACGACAGACGCTCTTAAAAAGCACATGACTGAAAACGACTGCAAGAACATACAgcCGTGTCCGCAATGTGGCGAGAACTTCAAAACTGAAGACCAGCTGAAAgagcatttaaaaatacattttaacacTGAAAAAGTCAAGTGTGATCAGTGTAACCGAACATTCGCGCACGAGCGTTCGTACGCGAACCACTTCCATCGCGTACATTTAGGCGTGAAGCTCAAGAAGAAATACAGCCGCAACAATGCTAGGATAACCGCTGTCGTCTGTGAAATATGTGGAAAGAAATGTATTAACAATGCGACGCTCCTGTACCACCAACGCACTCACACGGGAGAGAAACCGTTCCCCTGCACCGAGTGCCCCAAGAGATTCAGCGTGCACCAGCGGTTGCAGATACATTTACGCACACATACGGGCGAGCGTCCTTACAAATGTAGGAACTGTCCGAAAGCATTCAGACACAAAGCGGCGCTGAATCGACATGATAGgGTCCACACGGGAGTCAAACCTTACTCATGCTCGCATTGCGGGAAATGCTTCTCTCAGTCCAACTCTATGAAGCTTCACGTCAGGACTGTTCACTTGAAGATGCCTGCGCCTTATAGAGGAAGACATGCGGATAAGATAGTGGAACGAATGGTAGAATGA
- Protein Sequence
- MVELLACRVCLCTNVKLYNIYKYQLHFAYESLTGCKVLPQDGCPQYVCHVCSTLLLKWLSFKNICQKSQEKLKYAYGQNRLITTEYITSLQLSTPFLGKFSTSRSSISLTYNEDKEIKDEVYNDNDNTFNDDTETFANDIDFNNDSDDFNDKKVKSENSSSDEEPLASKKVKKKKRKVKKINVKSEKQDNGNQENDDDDDNLENYKIELRILTKEQQIEEIEARMKSLNYLHSFYKCEKCYKGFMSAATYKNHMIRHDPSSGSHVCEICHTRWRTSGSLHTHVVAAHERKFVCKLCAHVSNSKYKAKEHFKWHSGHKFVCDLCGASFEKSTSHLTHVRIHHPSKYSCEVCGESFIGENGLKMHKRKAHRGAEDEEKKESSRCPRCDVNFHTTDALKKHMTENDCKNIQPCPQCGENFKTEDQLKEHLKIHFNTEKVKCDQCNRTFAHERSYANHFHRVHLGVKLKKKYSRNNARITAVVCEICGKKCINNATLLYHQRTHTGEKPFPCTECPKRFSVHQRLQIHLRTHTGERPYKCRNCPKAFRHKAALNRHDRVHTGVKPYSCSHCGKCFSQSNSMKLHVRTVHLKMPAPYRGRHADKIVERMVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035988;
- 90% Identity
- -
- 80% Identity
- -