Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467327.1:1233210-1246166[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00043 0.039 15.4 2.5 1 23 233 255 233 255 0.99

2 12 0.22 20 6.9 0.6 1 23 262 285 262 285 0.92

3 12 7.2 6.6e+02 2.1 3.2 1 23 289 311 289 311 0.93

4 12 0.043 4 9.1 2.0 1 23 316 338 316 339 0.94

5 12 0.00014 0.013 16.9 0.2 1 23 343 366 343 366 0.97

6 12 0.0052 0.47 12.0 0.7 2 20 379 397 378 399 0.95

7 12 0.00064 0.059 14.8 0.3 3 23 408 428 407 428 0.97

8 12 0.025 2.3 9.8 3.8 2 23 435 457 434 457 0.94

9 12 8.4e-06 0.00077 20.7 0.9 2 23 477 498 476 498 0.97

10 12 1.8e-05 0.0016 19.7 2.8 1 23 504 526 504 526 0.99

11 12 3.4e-05 0.0032 18.8 1.9 1 23 532 554 532 554 0.94

12 12 5.6e-06 0.00051 21.3 5.3 1 23 560 583 560 583 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00043	0.039	15.4	2.5	1	23	233	255	233	255	0.99
2	12	0.22	20	6.9	0.6	1	23	262	285	262	285	0.92
3	12	7.2	6.6e+02	2.1	3.2	1	23	289	311	289	311	0.93
4	12	0.043	4	9.1	2.0	1	23	316	338	316	339	0.94
5	12	0.00014	0.013	16.9	0.2	1	23	343	366	343	366	0.97
6	12	0.0052	0.47	12.0	0.7	2	20	379	397	378	399	0.95
7	12	0.00064	0.059	14.8	0.3	3	23	408	428	407	428	0.97
8	12	0.025	2.3	9.8	3.8	2	23	435	457	434	457	0.94
9	12	8.4e-06	0.00077	20.7	0.9	2	23	477	498	476	498	0.97
10	12	1.8e-05	0.0016	19.7	2.8	1	23	504	526	504	526	0.99
11	12	3.4e-05	0.0032	18.8	1.9	1	23	532	554	532	554	0.94
12	12	5.6e-06	0.00051	21.3	5.3	1	23	560	583	560	583	0.98

Sequence Information

Coding Sequence: ATGGGAGAAATATTAGCTTGTCGTGTTTGTTTAAGTACAAATGTTAAACTGTACGATATATACCAATATCAACTGAATGTTGCGTACGAGAGTCTCACTGGCTGCAAGgtgTTGCCACATGATGGGTGTCCGCAGTACACCTGCAACGTCTGCAGTATGCTGTTGCTGAAATGGCTCGCATTTAAAACTGTCTGTCAGAAGAGCCAGGATAAATTAAAGTATGCATATGGACGAAATCATCTgATAACAACAGAATACATTACCAGTTTAAAACTAAGCACACCATTTCTATCCAAATTCACGACTAGTCGTAAAACTTTATCAGTCACATTCGACAATGATAAAGAAATCAAAGACGAAATATGCAACGACAGTGAAAACAACTTTAACGAAGATACATTTACAAACGAAATAGACTTCACGAATGATTCTGATGACTTTGGTaacgataaaaaagtaaaatccGAAAACTCTTCAAGCGATGAGGAACCTTTAGCGAATAAAAGAACTAAAAAGAGAAAGAAAAAAGTGAAAAAGCTGATTAAAATTGAGAAAAGAAATAACGGAAACAAAGAAAAcgacgatgatgatgataatttagAGAATTATAAGATTGAATTGAAGATTTTAACGAAAGAACAACAGATAGAGGAAATTGAAGCGAGAATGAAGTCGTTGAATTATCTGCATTCTTTTTATAAATGTGAGAAGTGTTATAAAGGTTTCATGTCGACTGCAACGTTTAAGAATCATATGGAACGCCATGATCCATCGACGGGTAGTCACGTGTGCGAGATCTGTCAAACAAGATGGAGGACATCGGGCGCTCTACACACGCACGTGGTGTCCGCACACGAGCGCAAGTTCGTGTGCAAACTGTGCTCACACGTGTCTAATTCCAGGTTTAAGGCAAAAGAACATTTTAAATGGCACAGCGGTCACAAGTTTGTCTGTGACTTGTGCGGGGCATCGTTCGAAAAGTCAACAAGTCATCTCACACACGTTAGAATCCACCATCCGTCGAAGTTCAGCTGTGAAATGTGCGGCGAGTCGTTTATAGGCGAAAATGGACTTAAAATGCATAGGCGGAAGGCCCATAAAGGCGTGGAGGCTGAAGAGAAGAGGGAAAAATCAACATGTCAAAAATGTGACGTCAATTTCCATACAATGGATGCTCTCAAGAAACATATGACAGAAAACGACTGCAAAAATATAAGGCCGTGTCCACAATGTGGTGATAACTTCAAGACGGACGATCAACTGAAGGAACATTTGAAAAGTCATTTTAATAGTGAAAAGGTGAAGTGTGACCAGTGTAACCGAACATTCGCGCACGAGCGTTCGTACGCTAACCACTTTCACCGCGTGCATTTGGGCGTGAAATTAAAGAAACGTTATAACAGGAATAACGCACGACTGGCTGTCGTTGTGTGCGAAATATGCGGGAAGAAGTGTATTAATAAAGCCACTTTAATATACCATCAGCGCACTcacacaggagagaaaccttacCAATGTACTGAGTGTCCTAAGAAGTTCAGTGTGCATCAGCGATTGCAGATACATTTGAGAACACACACTGGAGAGCGACCGTACAAATGTAGAAATTGTCCGAAAGCATTCAGACACAAGGCGGCGTTGAACCGCCATGACAGGGTACACACAGGAGTGAAACCATACTCCTGTTCGCATTGCGGCAAATGTTTCTCACAGTCCAACTCTATGAAGCTACACGTTAGGACTGTGCACTTGAAGATGCCAGCACCTTATAGAGGTCGGAATGAGCACAAGCTGGCGATGGCAGCCgagtga
Protein Sequence: MGEILACRVCLSTNVKLYDIYQYQLNVAYESLTGCKVLPHDGCPQYTCNVCSMLLLKWLAFKTVCQKSQDKLKYAYGRNHLITTEYITSLKLSTPFLSKFTTSRKTLSVTFDNDKEIKDEICNDSENNFNEDTFTNEIDFTNDSDDFGNDKKVKSENSSSDEEPLANKRTKKRKKKVKKLIKIEKRNNGNKENDDDDDNLENYKIELKILTKEQQIEEIEARMKSLNYLHSFYKCEKCYKGFMSTATFKNHMERHDPSTGSHVCEICQTRWRTSGALHTHVVSAHERKFVCKLCSHVSNSRFKAKEHFKWHSGHKFVCDLCGASFEKSTSHLTHVRIHHPSKFSCEMCGESFIGENGLKMHRRKAHKGVEAEEKREKSTCQKCDVNFHTMDALKKHMTENDCKNIRPCPQCGDNFKTDDQLKEHLKSHFNSEKVKCDQCNRTFAHERSYANHFHRVHLGVKLKKRYNRNNARLAVVVCEICGKKCINKATLIYHQRTHTGEKPYQCTECPKKFSVHQRLQIHLRTHTGERPYKCRNCPKAFRHKAALNRHDRVHTGVKPYSCSHCGKCFSQSNSMKLHVRTVHLKMPAPYRGRNEHKLAMAAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00284801; iTF_00035056; iTF_00382960;
90% Identity: iTF_00284801;
80% Identity: -