Clat056713.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- egg
- Assembly
- GCA_949710035.1
- Location
- OX453324.1:11382091-11418388[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5 1.6e+04 -2.6 0.1 29 38 41 50 34 51 0.79 2 2 7.2e-14 4.6e-10 40.7 0.0 4 75 82 146 79 148 0.90
Sequence Information
- Coding Sequence
- ATGGGTGACGATGAAGATTCCGCATTAGGCTCGCCTGTGTGCAAGAAGTCTTGCACCCCCGCGCCCGCGCACTACCCCGCGCGCGCCCCGCACCCGCCGCAACCGCAGGTGGCTGAGAACGTTACCAGCAGAGTTGTGTACTACACCCCCAAGAACGCAGTGAGACCGCTCAAGATGGTGGCGCACGTCTGCGGCCCGTACTGCAAGCGCAGTGACGTTCTGGCCTTGAAAGATCTCCGCACTTACAACCCGCTAGCCAAACCGCTGCTCAGTGGTTGGGAAAGACAAATAGTCCGTCTGAAGGGCCACAAGGAGGTGATGTATCGCGCCCCGTGCGGCCGCCGCGTGCGCAACATGCGCGAGTTACACCGCTACTTGCGGATCACGCATTCTGATATGGCAGTGGATTTGTTCGACTTCGCTCCGAACACGCATTGCCTGGCTGAGTTCGTGCTCAACAGTTGCTTGGTCGGGAAGAAGGATGAACTTGAACACGAGTTATCAATATTTAGAGTCTCTTTTGATGAGAATAGCAGTGTGGATCATTTGCGGAAACTTTTGAGAAATACCTGGAAATTAGTTCGTAGGGGTACTTTGAGAATTCCTTCTACGGCGGTTTCTCTTGACGGTGAAGATTCGGAAGTTTCGATTCTCAAGTTTAAGGCTCATTTGCTTATTCATTCCTTTAGTGATGATGATATTACGGATGCTACATGTTCACGCCTTATTGGACGCGCTCATTATATTCTTTCGAGGATCTCTAGAATTGCTAATCCTCCGGAGGAACTTTTTGTGTTACAGGGGAAGcttattaattacatcacattaaATGACGATTCTTCGGAATCTGAAACTGAAGATAGCTCTCCCCGCTCTTATGTTCGAACGGTGATTTATAAACCGGAGAAATCTTATAATTTGTGTTCtctcaatttaaaatttaacgggGAGACTTGTGTTCGCGCTTTCTTATATAGGTTGGAGGAGCTTCGCGCTGCCCGGAAGATACCAAAGGAGTACGTGCTCACCGGGTTTCCTGATTTAATCGAGGGCCCTGCTCTTTATTGGTATCGAGCCAACAAAAGTAAGTTCCGAAATTACGAGGAGTTGGTTTTGGCTTTGGAATCTGACTTGGAACTTCCTGGCTTTGACGATCGCCTTCTGGAAGAAGTCCGGTCGCGCACTCAGGCTAAGCACGAACCTTTAGCGGTGTTTTTGTCGACTATTCTGGGAATGATGTCACGTTTGAGTACTGAATTGTCTGACGCCGAAAAACTTAAGATAGTGATGAAGAATATTCGCCCTGAGTACAACCGTGAGCTGCTACTGGTTGACGTCAAGTCTATAGATCACTTACGGGTGCTAGGGAAACGCATTGAAACGGGTAAGCTTCGAATGGAGGGGTTTTCGGAACCTTCTTTTAATAAACCCAGTGTTGTTCCGGATTTTTATTATAAGCCAAAGGCTAGTGCTCCTAATACGGAGATGGCAAGTATGAGGAACTTTGATAAAAAGTTGCCGGTTGCATCCGTTCAGCGTCCCAGTCCTGGGAGGGGTTCTTCATACTGTTTCGTATGCAAGAACGATGAACACCCCACTTATTACTCGAGTGTTCCCTCTGTTGATTCTGTTAGGGCTTGTGAAATTGATAGTGTCTCGGATACGGACCTCTCCCACGGCAAAGAGAACGTCCCAGTCCCCTGCGTGAACTACTACGATGACTCCTTACCGGAGTTCTGCTCGTACAACACTGAAAGgacccccactgctggggtaccGCTGAATCTAGACCCCGAGTTCTTGTGTGGGTGCGATTGTACTGACGATTGTGAGGACAAGAGTAAGTGCGCCTGTTGGCGTTCGACTATGGAAGGAGCGCGCACTATCGGCATGGACTCTTCTAACGTTGGCTACGTATACCGGAGACTTCCAGAGCCGCTGCCTACGGGCATATATGAGTGTAACTCTAGGTGTAAATGCAAACAGACTTGCTTGAACCGAGTCGCTCAACACCCATTACAACTTAAACTGCAGGTATTCAAAACACTGAATCGTGGTTGGGGAATTCGAGCCTTAAACGATGTGCCAAAAGGTTCATTCTTGTGTGTGTATGCTGGCAATCTGCTTACAGACGCAACTGCCAATATGGATGGCCTAAACGAGGGTGACGAGTACCTAGCCGAGCTGGATTACATCGAGGTGGTGGAGCAGATGAAGGAAGGGTTCGAGGAAGATATACCGAACGCTGACAAGAGATTAGATAAGAAAAATCAAGCAAAACCTTCCGACGATGATTCCGAAGAGATATCAAGCTCTGAAGAAGAAGACACGACGAAAGACGACCAAGAAGACTATGACTTTAGGCCAGCTGCCGGCGAGCCGCTGACGATCACGCAGTTCAGCAAGAGACTTCGTAAGCGCGAAAAGAAGAAGCTTCAAGAAGATGCGAAACAGAAAGAGAAGGAAAAGGAAGCGCAGCAGAAAAACGAAGATGACTGCATCACCATCAGCGATGATGAAGAAGTGCGCGAGCCATCTCGTTTCACAGCTACTGCAGGAATGATAGCAAACGAATTCAAATCTAAGTACAGATCCGTACGCACTTGGTTCGGTAAGGACGAGGCGTGTTACATTATGGACGCTAAGGTTCAAGGGAACATAGGGCGATATCttaacCACTCCTGCACCCCAAATGTGTTCGTTCAGAACGTTTTCGTCGACACGCACGACCCGCGATTCCCGTGGGTAGCTTTCTTTGCCCTCTGCCATATAAAGGCAGGCACGGAATTGACGTGGAACTACAACTATGACGTAGGTTCGGTTCCTGGGAAGGTGCTGTACTGTTACTGTGGAGCACCAAATTGTAGAGGAAGgttgttgtaa
- Protein Sequence
- MGDDEDSALGSPVCKKSCTPAPAHYPARAPHPPQPQVAENVTSRVVYYTPKNAVRPLKMVAHVCGPYCKRSDVLALKDLRTYNPLAKPLLSGWERQIVRLKGHKEVMYRAPCGRRVRNMRELHRYLRITHSDMAVDLFDFAPNTHCLAEFVLNSCLVGKKDELEHELSIFRVSFDENSSVDHLRKLLRNTWKLVRRGTLRIPSTAVSLDGEDSEVSILKFKAHLLIHSFSDDDITDATCSRLIGRAHYILSRISRIANPPEELFVLQGKLINYITLNDDSSESETEDSSPRSYVRTVIYKPEKSYNLCSLNLKFNGETCVRAFLYRLEELRAARKIPKEYVLTGFPDLIEGPALYWYRANKSKFRNYEELVLALESDLELPGFDDRLLEEVRSRTQAKHEPLAVFLSTILGMMSRLSTELSDAEKLKIVMKNIRPEYNRELLLVDVKSIDHLRVLGKRIETGKLRMEGFSEPSFNKPSVVPDFYYKPKASAPNTEMASMRNFDKKLPVASVQRPSPGRGSSYCFVCKNDEHPTYYSSVPSVDSVRACEIDSVSDTDLSHGKENVPVPCVNYYDDSLPEFCSYNTERTPTAGVPLNLDPEFLCGCDCTDDCEDKSKCACWRSTMEGARTIGMDSSNVGYVYRRLPEPLPTGIYECNSRCKCKQTCLNRVAQHPLQLKLQVFKTLNRGWGIRALNDVPKGSFLCVYAGNLLTDATANMDGLNEGDEYLAELDYIEVVEQMKEGFEEDIPNADKRLDKKNQAKPSDDDSEEISSSEEEDTTKDDQEDYDFRPAAGEPLTITQFSKRLRKREKKKLQEDAKQKEKEKEAQQKNEDDCITISDDEEVREPSRFTATAGMIANEFKSKYRSVRTWFGKDEACYIMDAKVQGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVAFFALCHIKAGTELTWNYNYDVGSVPGKVLYCYCGAPNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -