Clat038391.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453313.1:8053517-8071770[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-12 8.1e-09 36.8 0.2 7 58 248 301 244 313 0.85 2 3 4.6e-08 0.00029 22.2 0.1 14 58 301 347 299 359 0.81 3 3 6.8e-11 4.4e-07 31.2 0.0 14 70 347 401 345 406 0.85
Sequence Information
- Coding Sequence
- ATGTCGGAAGAAATGGCGGTGACTGATAACGCATCAAGCGAAGATGCCAAATTGAATGATGAAGAAACGACTTCAGATGATGCCGTTCAGGATGAAGTGGCTCCTCCTGAAGCTCCAACCGTGCTAGAAGATCCCCCAGCCGAGGAGCAACCGAGTACGGCTATCGAAGAAGGTGACCTAATTGGACAAATAGAATTGTTTGTTGAAAAAATTGAAACTAAAGAAGAGCCAGCTGATATTCCTGAGTCGGAGCTTAAGTCTGAAGCAGCGGAGATACCAAAACCAGAAGACGTCATAATGGAGACAAGGGATAGTGCAAAAGACGATCCAATAGACGATGCAAAAGACGATGCAAAAGTCGATGCAAAAGATGATGCAAAAGACAATGAAGAAGAAGGAAAACGAGGCATTAAACGCAGAGCATCAACAGCCTTTAGTGATAATGTAGACGAGGAGTTTAAGGGCTTTGATGTTACTGATCCGAGCAATTTGAATGACTACAGCCGTGTTTTGGAACGACTAGAAGCTGAAGTGACCGCAGCCAGTAAGGTCTTCACGCCTGTGAGGAGCATAATGGCTACCCCTTCTGCTCCTGTACGCGCTTCCAAGAGACCAAGGCAAGATACTGATGGATCCAGACCATCCTCAGCGTTGTCATCAAAATCAGATGAAAATTTGTCAGATatggcGTCGCCAGCCGCCCGGCGGCGCGGGACGGGCGGCGAGATGTCGTCGCCGCTACTGCGAGTGCCGCTAGAGCGCGGCTGGAAACGCGAACTAGTGTACCGGGCCGCTCTGGACGCGCACTCGCGCCGCAACGCTGACATCTACTACTACACGCCCAAGGGCAAGAAGCTGCGCTCCACCAGGGAGGGAGGTATGTACATGTCGCGACATGTCGGCTGGGAGAGTGAGCTGGTGTACCGGGCCACTCTGGACGCGCACTCGCGCCGCAACGCAGACATCTACTACTACACGCCCAAGGGCAAGAAGCTGCGCTCCACCAGGGAGGGAGGTATGTACATGTCGCGACATGTCGGCTGGGAGAGTGAGCTAGTGTACCGGGCCACTCTGGACGCGCACTCGCGCCGCAACGCTGACATCTACTACTACACGCCCAAGGGCAAGAAGCTGCGCTCCACCAGGGAGgtgtcAGAACACTTGTCCGGCACCGGACTTACGCTTGAGAACTTCTCCTTCTTCAAAGAACCACTGGGTGTTGATGATCCTGAGAAAGAAATAATTAGGGACGCGAAGCTTATGCACGCACGTCGCATTGAGTCGCcggtggcttcgcccgcggttAGCGCCGCCAGTACGGGTCCGTTGGAATCCAAACGCACGCCCAAGCCGAAACAACCCAAAGGGGCCAGCCCTGAACCCGTTATCAAGTCACCGCCTGCCAAGATCAAGGTGAAGTCCATGGGGTCCCGGCTGAGCAACAGTTCCGCGCCCCCCAAGGCCCCCGCCGCCGCCAAGAAAcccgcccccgcccccgcccccgccgcTGACAACAACAACTCGGCCGCTTGGAAGAAACCCAGTGCAATTAACCGCCTGCCGCGGGTACTGAGCGCGCGCGAGTGTAGTTGCGTTGCGGCCAGGCCGCCCGCCGCCGTGGCCGCCACCGCCACCGCCACGGCCACAGTGGCCGCCACCGCCACACTTACCGCCACGGCCGGGCCGCCCGCCacgccgccaccgccgccgctGCAGAGCCGGCCGCCGATTGCTTCGCCTGAGCAACAGCGTACACCCACAAGACAAGTTGTACAGCCGTGTTCTCTGACATGTGGGCGTGGCGTGCCCACGCTCGCGTGCGCGGCTTGCCTGTGTCTGTACCATCCCGCCTGCGCGCAGCACTATGCGAGCGACTTGCAGTTCTACTGCAAGAACTGTCGCAAATCTTCCTCCCCGTGCTCGGACCCGCCGCCGCTCACACACAAGTCTGGCATCACCACGTCCAGTATGGCAGCGTCTCTGCCAGCGCCGGCGCCTCGCCGGGTACCCGTACCGGTGCCTGTACCTGTACCCGTGCCCGTACCGGTACCCGTGCCAAGGCAGATAAGGCCAGAGAAGCGAGTGCTGCTTAGGATGAAAGCGGCAAGCGGCGGGTCAGAGGGCGAGCGAGTGTGGGCGGTGGCCGGGTGCGGGTCAGTACCGAAACCCAGTGGGGGGAGCAGCGGGGGCCCCGTCGGGGGGCGGGTGGCGGGGGCGCTCCCCCAGGTGCTGGTGAGGCTCAACGGGAGGCGGTTCATAGTCGTCGGCCGGTCGATGGCGCAGCCGCCGCACCAAACTGTGAGTCCTAGTGCATAG
- Protein Sequence
- MSEEMAVTDNASSEDAKLNDEETTSDDAVQDEVAPPEAPTVLEDPPAEEQPSTAIEEGDLIGQIELFVEKIETKEEPADIPESELKSEAAEIPKPEDVIMETRDSAKDDPIDDAKDDAKVDAKDDAKDNEEEGKRGIKRRASTAFSDNVDEEFKGFDVTDPSNLNDYSRVLERLEAEVTAASKVFTPVRSIMATPSAPVRASKRPRQDTDGSRPSSALSSKSDENLSDMASPAARRRGTGGEMSSPLLRVPLERGWKRELVYRAALDAHSRRNADIYYYTPKGKKLRSTREGGMYMSRHVGWESELVYRATLDAHSRRNADIYYYTPKGKKLRSTREGGMYMSRHVGWESELVYRATLDAHSRRNADIYYYTPKGKKLRSTREVSEHLSGTGLTLENFSFFKEPLGVDDPEKEIIRDAKLMHARRIESPVASPAVSAASTGPLESKRTPKPKQPKGASPEPVIKSPPAKIKVKSMGSRLSNSSAPPKAPAAAKKPAPAPAPAADNNNSAAWKKPSAINRLPRVLSARECSCVAARPPAAVAATATATATVAATATLTATAGPPATPPPPPLQSRPPIASPEQQRTPTRQVVQPCSLTCGRGVPTLACAACLCLYHPACAQHYASDLQFYCKNCRKSSSPCSDPPPLTHKSGITTSSMAASLPAPAPRRVPVPVPVPVPVPVPVPVPRQIRPEKRVLLRMKAASGGSEGERVWAVAGCGSVPKPSGGSSGGPVGGRVAGALPQVLVRLNGRRFIVVGRSMAQPPHQTVSPSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -