Clat014268.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453301.1:3412988-3418522[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.92 9.9e+03 -2.7 0.1 240 280 57 97 51 99 0.55 2 2 6.9e-21 7.4e-17 63.4 4.7 1 53 116 167 116 187 0.85
Sequence Information
- Coding Sequence
- ATGGGCAGGCGGTCAAAAATGGCTACGCCTAATAACAGTGACGAGGAGAGTGGTGGTGCCTTCACCGACGGAGACTTTGGTGATTCAGACGAAGAGACGGTAGTTGAAAATATTGGAAATAATTCACAAATTCCTGTTAATGAAACAGTGAATTCTGACTTACAAAATAGACATCTGTCTCGCCAGTATTCTAATGGATACGTAGAGCAAGCTAAACTTAATGGACATAAAAGTGTTGAAAATGGAAATTCAAGCCATGGAGAAACTAGTGTTGACCTACGTAGAGATTCCCATGGGGACCAGAATCCATCTATAGTTGGGATACTTGGTGATCAACAAAATCATGCAGAACAACGGCtcgcggcgcggcgggcggcgcgcgcggagGCGCGGGAGATCCGCATGCGCGAGCTGGAGCGGCAACAGCGCGAGCAGGAGGACCATGCCGACAAGGCATACGACATGTACGGCAACGCTGCCTCGCTGCGCGCCACTGCCGCCGACTTCAAGGGTGCGTTCAATAATGCTGTTCTTCTGTTCACTCTTATCACAGTAGGCACGGTAGATCTGCATGCGCGAGCTGGAGCGACAACAGTGCGAGCAGGAGGACCATGCCGACAAGACGTACGACATGTACGGCAGCGCGGCCTCGCTGCGCGCCACCGCCGCTGA
- Protein Sequence
- MGRRSKMATPNNSDEESGGAFTDGDFGDSDEETVVENIGNNSQIPVNETVNSDLQNRHLSRQYSNGYVEQAKLNGHKSVENGNSSHGETSVDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGNAASLRATAADFKGAFNNAVLLFTLITVGTVDLHARAGATTVRAGGPCRQDVRHVRQRGLAARHRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -