Cses002312.1
Basic Information
- Insect
- Cotesia sesamiae
- Gene Symbol
- SKP1
- Assembly
- None
- Location
- scaffold:1820-6999[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.63 1.2e+02 2.9 0.0 77 105 161 189 158 193 0.85 2 4 0.27 53 4.0 0.0 76 105 298 327 295 331 0.85 3 4 0.0075 1.4 9.1 0.0 11 71 351 410 346 425 0.82 4 4 0.74 1.4e+02 2.6 0.0 76 105 441 470 438 474 0.84
Sequence Information
- Coding Sequence
- ATGACATCACTAACAGAATCAGAATTTGCTCAATCAAATATCGGGCAGCCCACGCTTTCTCAAATCTTTTTTGTTTTACGCTTTTTTTATGTTACACATCAAACAGTTATTCTTGAGCATCACCTACTATCTGCTAGTAGATTTTACAGTCACCAACCTCTTGTGTTCAAAGTTTGTGAGTTAAATTTATCAACAATGGCTGAAACAGTCAAGGTCGAAAGCGGTGATCAACAGATTTTTGAAGTGCCCATTAAAATCGTCATGATGTCGGCTACCATGAAATCCATCCTGGATAGTCTCGGTATGGAGGGCCAAGTCAATGAGCAAGCGATTCCTCTAACATGTATCAAGGGAGAGATCCTGGCAAAAGTTATCAAGTGGTGCGAGAAACACGTCGACGATGATCCTAAACCAGATGATGACGATGACAACCAAGAAAAACGAATTGATGATATTCCCGAGTGGGATATTGACTTCCTGAAAGTTGACCAGGAGACTCTCTTTGCCATCGTGCGCGCCGCTAACTTCCTGGACATCAAGGGGCTCATGGAGGTCACCTGCAAAACTGTCGCCAAGTTAATTAAGGGAAAGACTCCTGACGAAATCAGAACACATTTCAACGTTGTGCCCAAGCTCTTAAGCAGTGACAAAGAAGTGTTTGAAGTTGACACCAAGGTGGCTAAAATGTCCGCCACCATTAAGACGATGCTGGAGGATCTCGGCTTGGACGAAGGCGACGACGAGATAGTTCCTCTTCCGAGCATTGAAGGTCCCATTTTGAAAAAAATTGTCGAGTGGGCCGAGTATCATAAGAACGACCCTCCAGCACCGGAAGACGATGACAACAGAGAAAAACGATCGGATGATATTCCCGAGTGGGACGTTGACTTCCTGAAAGTTGACCAGCAAACTCTCTTCGCCATCATCCGTGCCGCTAACTTCCTGGACATCAAGGGGCTCATGGATGTCACCTGCAAAACCGTCGCTAACATGATCAAGGGCAAGACGCCGGAGGAAATTAGAAGAACCTTCAACATCACCCCGATGATGACTAACATTAAACTTCAGGCGAATGATAACGAAATTTTCGATGTAGATGTTGAAATAGCAAAATGTTCGGTCACCATCAAAACCATGTTGGAGGATCTGGGTATGGACGAGGATGACGACGAAGTGGTACCTTTGCCCAACGTTAACTCGGCTATTTTGAAAAAAGTCATCCAGTGGGCGACTTACCACAAGGATGACCCACCACCAGCTGAAGACGATGAGAACAAAGAGAAAAGGACTGATGACATCAGCTCATGGGATGCCGATTTCCTTAAAGTTGACCAGGGTACCCTGTTCGAGCTGATTCTCGCTGCAAATTACCTTGATATCAAAGGTCTTCTGGATGTTACTTGCAAAACTGTCGCTAATATGATTAAAGGAAAGACTCCTGAGGAAATTAGAAAAACTTTCAACATAAAGAACGATTTTTCAGCTGCTGAGGAGGATCAGGTTCGCAAAGAAAACGAATGGTGCGAGGAAAAGTAG
- Protein Sequence
- MTSLTESEFAQSNIGQPTLSQIFFVLRFFYVTHQTVILEHHLLSASRFYSHQPLVFKVCELNLSTMAETVKVESGDQQIFEVPIKIVMMSATMKSILDSLGMEGQVNEQAIPLTCIKGEILAKVIKWCEKHVDDDPKPDDDDDNQEKRIDDIPEWDIDFLKVDQETLFAIVRAANFLDIKGLMEVTCKTVAKLIKGKTPDEIRTHFNVVPKLLSSDKEVFEVDTKVAKMSATIKTMLEDLGLDEGDDEIVPLPSIEGPILKKIVEWAEYHKNDPPAPEDDDNREKRSDDIPEWDVDFLKVDQQTLFAIIRAANFLDIKGLMDVTCKTVANMIKGKTPEEIRRTFNITPMMTNIKLQANDNEIFDVDVEIAKCSVTIKTMLEDLGMDEDDDEVVPLPNVNSAILKKVIQWATYHKDDPPPAEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFSAAEEDQVRKENEWCEEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00381783;
- 90% Identity
- iTF_00381783;
- 80% Identity
- iTF_00381783;