Crub016712.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:267-1765[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.14 5.2e+02 1.2 0.1 24 43 117 136 100 141 0.73 2 8 0.0053 20 5.7 0.0 21 44 142 165 137 170 0.91 3 8 0.032 1.2e+02 3.2 0.0 21 45 170 194 166 198 0.89 4 8 1.7e-05 0.066 13.7 0.1 21 45 198 222 195 226 0.91 5 8 0.04 1.5e+02 2.9 0.1 22 43 227 248 222 253 0.84 6 8 0.0035 13 6.3 0.9 21 43 254 276 242 286 0.75 7 8 0.0088 33 5.0 0.0 21 47 310 336 308 344 0.86 8 8 1.9 7.1e+03 -2.4 0.0 23 45 340 362 336 364 0.80
Sequence Information
- Coding Sequence
- ATGTTGAACCAAGAATACCATTTCAAAGAAAATGATTTTCTTGATCAAGAGAATAAATTCTTGAGTCAAGAAATTATTCTTGATTTAAAATTTATCAAAGAAGAACCTGAAGTTACTGATGATAAAAATGATAAAATTTcaatttttactgaagaggccgacgctgaaaaaaccaacACCACCTTACCTGAAACTTCAATAGCAAAGCGAACAACATCCAAGCCTAGTCCAAAATCTTCACCAAAAACCAATAACACCAAAAAGAAAACTAAAAAAGTAAATCCAAAAAGTATCAACTCAGAATCAAAGAAAGTTGCAAGAAGCACTTTACAAATTGAACCGGCGAAAGTTTACACATGTGAAGTATGTTCCGCGAAATTCCATCGAAAAGGAAATTTCAATCAACACAAAGTAATCCATACCGGCGAAAAGCCTTTTGGATGCAAATTATGTTCCTCGAGATTCAATCAAAATAGTTCTTTGAAGCGACACGTGCTAACGCATTCAGAAGAGAAACCTTACGCTTGCAATATGTGTCCCTGGAAATTCCGACTGAAACAACAGCTAAAATCTCACCTGGACACCCACATGGAAGAAAAGCCCTATACATGCGATATCTGTTCCAGAAAATTCCGCCAGAAACATAGTTTGAAAAAACATCTTAGGACCCACTTGGATGAAAAACCTTTTTCTTGCGATGTTTGTTTCCGAAGCTTTCGAGAATGCGGTCAAATGAAAATTCACAAGCGAATCCACTCTGGAGAACAACCCTACGCTTGCGAAATTTGTCCTGCGAAGTTCCACGTAAGGAGTCTATTAAACAGACACAAACTAGCTCATGCTGAAAAAAAACCTTATCCTTGCAATTTTTGTCCTGCGACGTTTCATATAAAGTATGTGTACAAAACCCACATGCTTATTCATACAGGAGAAAAACCCTACCAATGTGAGGTTTGTTTGAAGCAATTTCGCGAAAAAGGGACTTTGGATAGACATATGGTTGTTCATATCGAAGGTAAACCTTTTGGCTGTGATTTCTGTTCTTTCAAATCTCGCCGGAAGAAAGGTTTGAACGCGCATATGAAAATTCATTTAGATGATTTTACGTTTGAGAAATTTTGA
- Protein Sequence
- MLNQEYHFKENDFLDQENKFLSQEIILDLKFIKEEPEVTDDKNDKISIFTEEADAEKTNTTLPETSIAKRTTSKPSPKSSPKTNNTKKKTKKVNPKSINSESKKVARSTLQIEPAKVYTCEVCSAKFHRKGNFNQHKVIHTGEKPFGCKLCSSRFNQNSSLKRHVLTHSEEKPYACNMCPWKFRLKQQLKSHLDTHMEEKPYTCDICSRKFRQKHSLKKHLRTHLDEKPFSCDVCFRSFRECGQMKIHKRIHSGEQPYACEICPAKFHVRSLLNRHKLAHAEKKPYPCNFCPATFHIKYVYKTHMLIHTGEKPYQCEVCLKQFREKGTLDRHMVVHIEGKPFGCDFCSFKSRRKKGLNAHMKIHLDDFTFEKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00381342;
- 90% Identity
- iTF_00381342;
- 80% Identity
- iTF_00381342;