Crub021000.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:5143-8922[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0046 0.48 11.3 0.4 1 23 87 110 87 110 0.96 2 11 0.0087 0.9 10.5 4.6 2 23 235 257 235 257 0.91 3 11 3.1 3.3e+02 2.4 0.5 1 23 430 453 430 453 0.94 4 11 0.018 1.9 9.4 0.4 2 23 506 528 505 528 0.94 5 11 0.00027 0.028 15.2 0.4 3 23 556 577 554 577 0.92 6 11 0.0067 0.7 10.8 3.6 2 23 626 648 625 648 0.96 7 11 0.066 6.8 7.7 4.2 2 23 662 684 661 684 0.92 8 11 8.1e-05 0.0084 16.8 0.1 2 23 736 758 736 758 0.93 9 11 0.42 43 5.2 1.1 1 23 840 862 840 862 0.98 10 11 0.00034 0.035 14.9 0.7 2 23 874 896 873 896 0.89 11 11 0.027 2.8 8.9 0.6 1 23 985 1008 985 1008 0.97
Sequence Information
- Coding Sequence
- ATGACGTCCACCATGACACTCCGTGTACCAGCAACATTGATAACAACCGGCGATCAAATGGCATCCGAGGAAGAAGATGACAACAACGATGACAACGGCCTTGTAGATGAGATCGACGACTTGGAGGGGGAAATTACATCAGCAGCTCATGAGAACCACACCGAACGAGAATCAGACAATGAGTTCATTGATAAAGGTAAGCCTACGACACTTGTTAGTGATCAGGGAATGTCTAAAGATGAAAATCTCAATACTGAATTCCGATGCTTACTTTGCGGTAGTTTGTTTGAAGATAAAGACACTTTATTGCGTCACAGAGAAAGTGAACACGATACTAACAATTTGACGAGGCAGTCAATTACTCAAAGCCCGCTCTCGCAAAATTCTTTGCTACCTGTCGCCGTTAAAATTGAGCAGCAGGAAGAATCGTCTGATAATCCGGTAAATCTTTCGTCGGGTTTTAATTTAAACAATTTCACAAGCACATGGGTGACGGGAGCAACGCAGCAAGCCCAAATACAGGAGTCAGAGTGGTCCAGTCAGAATTCATTAATGATATCGGGTCAATTGTCGTGTTTACCTTATCCCAATGCTTTAACGCAGTATCTTCCTATTCCAACTTTTCCGATTACCGAAAATGGACAACTGCCGCGTAATGTAGTCGGCGGGTCAGCGCCCATTAGAATTTTCAACCCAGATGCTTACTGTGAGCTTTGTAACAAAGAATTTTGTAACAAGTACTTCCTAAAAACGCACAAAGCTAACAAACACGGTATCTATATTGATCAACCGTCGTCAAGTACACCTGTTCATGTTGAACAGATTTCTGATCATACTGACTCTCAGTCGTTACCTGCTACTGGCCTGAGTGAAGATGATTGCAGAGAGATGCCATCATTCAATTCTAGTCCGAGTAATATTGAAGCTTTAGTTAAGCAAGAGTACGGTATTGAGCAAGAAGATGCCAAATTTATGCCAGCGCCGAGACAGTTGTCACCACAGCTGTGTCAACAACTTAGAGAATGCGGTTTCACGGTTGATAAGCTAAGGTCATTGGGTGTTATCAATCCAGACGTATTCTGTGAACTTTGCTGCAAAGAATACTGCAATAAACACTTTTTACGAATTCACAAAATTAAAAGACACGGTATTCTGATGCAAAATAATGATAAGTCGCCGAACAATCCTGGAGCTGCTGCATCCTGGCATCAGATACAAACAAGTCCTCTCAATTTGATCGTCAGTGATGCTCCGGCGGGTTCAGAGTCCACTGACAAGTCCGAAGATTATGAATGCAAGCCATGTAGCATCAGGTTTCAGACAATGGGTCTCTATGAAATGCACAAAAGTAAAATTCATGATACTGAAGAGCCTAAATCACCGATAGGTAATATGGAAACCGAAGAAATCGACAGCGATCAACAACCACGCCCAGACACTATTTCTCAGAATCTTCAGAACTTACAGACAATGATTTTACAATTGAATAGCTTGAAGCCTGGTAACAGATCGATTGTTTGCGGAATATGCAGCAGAGAATGTGAGAGTAAGTTGGCACTGAAAACACACATGAGTTTGGAACATGGTACAAACATTTTGGAAGAATCGCTCTCTCCATCCCAGCAGATGATCGATAGTTCTTTCCTCACTGGTTTTTCAACATTTTGCACTCTGTGTGAGAAAGACTTTCGGACTCCTGAATCCTTGAAGCAGCACCTCGCTGAAGATCATGGTCATTCGACAATATTGACATCGAATAACAATTCGTCTAATGTTCCTCAAATTTCAACCCCAGCTCCGACGAGCCAGGTGCCAGGTCCGCCCATTCCTCCTCCAGCAGACAAGAAATTGTCATCAATGACTCCGACTTCGAGCTACTGCGAAATATGTAACAAGGAATTGTGTAACAAGTATTTCATGAAAACACACATGCAACGGATGCATGGAATTGAAATAGAGAACGGATCGCAAATTGGTGGTGTGGTGTGCAACATTTGCAATAAAGAATTGTGCAGTAAATATTTTCTTCGCGTCCATAAGCACAATACCCATGGTATTGTCGACGAAGGTACAGTTGGAGGAGCAACATCCAGTTCGATAAAACCTGAAAATTTCGAGTCATCTAATTCCGAAGATCTCGCAGCGTTGAAATCTAATGATCAACTGGGAGATATGAGCCACAGATACTTTTCACACTTTACTGAAGTTTGTCCTGTTTGCGGCAGAAGATTTCGCAGCATTAAATGGTTGAAAGCCCATTTACTAGGTGATCACGGTAAGGTCGGTGTTAACAAGTGGCGCGAATTAGAACAACAATATCAGCAAAATCAAACAACTGGGGCGAAGAAATTCCCTGGAAATTCTTTGATGAATCGTCCTGTCCAGCCAAGCCCAAATTTAAAGATCCCAAATGGATTTGATATTGCCCATCACCTAAAGCCAAACGACTATGGGGCAAGTGTTGGTAAACAAGTGTTGTCTTCATTATTGGGCAGCGGTGAAGATCAGAATAAAACCTACCGTTGCTCTTTTTGCAATTTCATAACGCCAGTTCTCTCGTTCTTGTTTTTGCACGAAAAATCTCATTTACCTAGCGATAACATTAACTTAGAGCCTCTACAGTGTCCAATCTGTTCTCAAGGATTTACCCAACCAGACATGCTACATCATCATTTGGTGGCGCGTCATCAAGTTACAGGAATGCAGATCCCGTTATCGATCATCGCAAACCAAGCTAATCTGTCTTTGGAAGGTAATCAAGTTGAACGCGATGGCGCTGATCATCAAGAGTCTTCAGGAGGGATCGAGGAAAATAACAAACATGGCAATGTTTTTCCACCACAAACAAATTTTGATCCAAATAAAAACAATCGCGACGAACAAAGTTTAAATTTGGGAGCAGTTAGTGCCACAACGGCTACAGCAACTATTTTAGTGACACCACAAGTTGCATACAAATGTGCTCAATGTGGTCTAGCGACGACCAATTTGAATCGCATTAAGAAGCATGTTAAAAAAGATCACAAGTCAATCGGTGATCCGGCGGATAATGTTATCGCAGAGCTGACCAAAACTCTGAACGATCTTGCGAATAAACACAAAGTACCTGTTAGCTATGCAATACCCCAAGATACTAATTCAAATCCAGATACCGGCACAATAATGCAACCATTTATCATTGAGGAGAAAGATTGCGGCTTCAGTAGTGATGATAGCAGAGGTGAAAAAAAATTCTCACCTGTTTTAATTTATCTACCTGTACGTACGCGAGTTACCGGTGTCCTTACGACTTCCTTTACACTTAGTCCTGCTTAA
- Protein Sequence
- MTSTMTLRVPATLITTGDQMASEEEDDNNDDNGLVDEIDDLEGEITSAAHENHTERESDNEFIDKGKPTTLVSDQGMSKDENLNTEFRCLLCGSLFEDKDTLLRHRESEHDTNNLTRQSITQSPLSQNSLLPVAVKIEQQEESSDNPVNLSSGFNLNNFTSTWVTGATQQAQIQESEWSSQNSLMISGQLSCLPYPNALTQYLPIPTFPITENGQLPRNVVGGSAPIRIFNPDAYCELCNKEFCNKYFLKTHKANKHGIYIDQPSSSTPVHVEQISDHTDSQSLPATGLSEDDCREMPSFNSSPSNIEALVKQEYGIEQEDAKFMPAPRQLSPQLCQQLRECGFTVDKLRSLGVINPDVFCELCCKEYCNKHFLRIHKIKRHGILMQNNDKSPNNPGAAASWHQIQTSPLNLIVSDAPAGSESTDKSEDYECKPCSIRFQTMGLYEMHKSKIHDTEEPKSPIGNMETEEIDSDQQPRPDTISQNLQNLQTMILQLNSLKPGNRSIVCGICSRECESKLALKTHMSLEHGTNILEESLSPSQQMIDSSFLTGFSTFCTLCEKDFRTPESLKQHLAEDHGHSTILTSNNNSSNVPQISTPAPTSQVPGPPIPPPADKKLSSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGSQIGGVVCNICNKELCSKYFLRVHKHNTHGIVDEGTVGGATSSSIKPENFESSNSEDLAALKSNDQLGDMSHRYFSHFTEVCPVCGRRFRSIKWLKAHLLGDHGKVGVNKWRELEQQYQQNQTTGAKKFPGNSLMNRPVQPSPNLKIPNGFDIAHHLKPNDYGASVGKQVLSSLLGSGEDQNKTYRCSFCNFITPVLSFLFLHEKSHLPSDNINLEPLQCPICSQGFTQPDMLHHHLVARHQVTGMQIPLSIIANQANLSLEGNQVERDGADHQESSGGIEENNKHGNVFPPQTNFDPNKNNRDEQSLNLGAVSATTATATILVTPQVAYKCAQCGLATTNLNRIKKHVKKDHKSIGDPADNVIAELTKTLNDLANKHKVPVSYAIPQDTNSNPDTGTIMQPFIIEEKDCGFSSDDSRGEKKFSPVLIYLPVRTRVTGVLTTSFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380678; iTF_00382118; iTF_00379874; iTF_00379178; iTF_00378314;
- 90% Identity
- iTF_00380678;
- 80% Identity
- -