Ccon008250.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:11684701-11688495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.006 0.72 11.1 0.4 1 23 173 196 173 196 0.96 2 12 0.011 1.4 10.2 4.6 2 23 321 343 321 343 0.91 3 12 3e-05 0.0036 18.4 0.8 2 23 409 431 408 431 0.95 4 12 4.1 4.9e+02 2.2 0.5 1 23 590 613 590 613 0.94 5 12 0.024 2.8 9.2 0.4 2 23 666 688 665 688 0.94 6 12 0.00035 0.042 15.0 0.4 3 23 716 737 714 737 0.92 7 12 0.0088 1 10.6 3.6 2 23 786 808 785 808 0.96 8 12 0.086 10 7.5 4.2 2 23 822 844 821 844 0.92 9 12 0.00011 0.013 16.6 0.1 2 23 896 918 896 918 0.93 10 12 0.54 65 5.0 1.1 1 23 1000 1022 1000 1022 0.98 11 12 0.00068 0.081 14.1 0.7 2 22 1034 1054 1033 1056 0.89 12 12 0.035 4.2 8.7 0.6 1 23 1145 1168 1145 1168 0.97
Sequence Information
- Coding Sequence
- ATGACGTCCACCATGACACGTGAGAGAATGTTGATGCCGCCATCTAACGAACTAGACAGTGAGTGTTCTAGTGGTGGCGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGATCTTCGCCGACGATTGCAGACTGACGACAATCTAGACTCGAGTAGCCCGAAAAAGCGTCGTAAGCAAACGACACCAGTTCGCGTACCAGCAACATTGATAACAACCGGTGATCAAATGGCATCCGAGGAAGAGGATGACAACAACGATGACAACGGCCTGGTGGATGAGATCGACGACTTGGAGGGTGAAATTATATCAGCAGCTCATGAAAGCCGCACCGAACGAGAATCAGACGATGAGTTCATTGATAAAGGTAAGCCTACGACACTTGTTAGTGATCAGGGAATGTCTAAAGATGAAAATCTCAATACTGAATTCCGATGCTTACTTTGCGGTAGTTTGTTTGAAGATAAAGACACTTTGTTGCGTCACAGAGAAAGTGAACACGATACTAACAATTTGACGAGGCAGTCAATTACTCAAAGCCCGCTCTCGCAAAATTCTTTGCTACCTGTCGCCGTTAAAATTGAGCAGCAGGATGAATCGTCTGATAATCCGGTAAATCTTTCGTCGGGTTTTAATTTAAACAATTTCACAAACACATGGGTGACGGGAGCAACGCAGCAAGCCCAAATACAGGAGTCAGAGTGGTCCAGTCAGAATTCATTAATGATTTCGGGTCAATTGTCGTGTTTACCTTATTCCAATGCTTTAACGCAGTATCTTCCTATTCCAACTTTTCCGATGACCGAAAGTGGACAGCTGCCGCGTAATGTAGTCGGTGGGTCAGCGCCCATTAGAATTTTCAACCCAGATGCTTACTGTGAGCTTTGTAACAAAGAATTCTGTAACAAGTACTTCCTAAAAACGCACAAAGCTAACAAACACGGTATCTATATTGATCAACCATCGTCAAGTACACCTGGTGCGAATGATAATGGACTATTAAGCTATCCTAATTCACTTTTTCCGTCAGTCAATGTTAAAATCGAGCCACAGCAACAGCAACCGCAGCTTCAGTTGTCGCAGCAACAGAAATTAGAAACACCAGAAATCAGTCCGGTTTCAATGATTCCAACAATTCCTTGTGATATTTGCCAAAAAAAATTTAAAAATGAGGAATTGCTAAAGAAACACAAGCAAAAAATTCATGTTGAACAGATTTCTGATCATACTGACTCCCAGTCGTTATCTGCTACTGGCCTGAGTGAAGATGATTGCAGAGAGATGCCATCATTCAATGCTAGTCCGAGTAATATTGAAGCTTTAGTTAAACAAGAGTACGGTATTGAGCAAGAAGATGCCAAATTTATGCCAGCGCCGAGACAGTTCTCACCACAGCTGTGTCAACAACTTAGAGAATGCGGTTTCTCGGTTGATAAGCTAAGGTCCCTGGGTGTTATCAATCCAGACGTATTCTGTGAACTTTGCTGCAAAGAATACTGCAATAAACACTTTTTACGAATTCACAAAATTAAAAGACACGGTATTCTGATGCAAAGTAATGGTAAGTCGCCGAACAATCCTGGAGCTGCTGCATCCTGGCATCAGATACAAACAAGTCCTCTCAATTTGATCGTCAGCGATGCTCCGGCGGGTTCAGAGTCCACTGACAAGTCCGAAGATTACGAATGCAAGCCATGTAGCATCAGGTTTCAGACAATGGGTCTCTATGAAATGCACAAAAGTAAAATTCACGATATTGAAGAGCCTAAATCACCGATAGGTAATATGGAAACCGAAGAAATTGACAGCGATCAACAACCACGCCCAGACACTATTTCCCAGAATCTTCAGAATTTACAGACAATGATTTTACAATTGAATGGCTTGAAGCCTGGTAACAGACCGATTGTTTGCGGGATATGCAGCAGAGAATGCGAGAGTAAGTTGGCGCTAAAAACACACATGAGTTTGGAACATGGTACAAACATTTTGGAAGAATCGCTCTCTCCATCCCAGCAGATGATTGATAGCTCTTTCCTCACTGGTTTTTCAACATTTTGCACCCTGTGTGAGAAAGACTTTCGGACTCCTGAATCCTTGAAGCAGCACCTCGCTGAAGATCATGGTCATTCGACAATATTGACATCGAATAACAATTTGTCTAATGTTCCTCAAATTTCTACCCCAGCTCCGACGAACCAGCTGCCGGGCCCGTCCATTCCTCCTCCAGCAGACAAGAAATTGTCATCAATGACTCCGACTTCGAGCTACTGCGAAATTTGTAACAAAGAATTGTGTAACAAGTATTTCATGAAAACACACATGCAACGGATGCATGGAATTGAAATAGAGAACGGATCGCAAATTGGCGGCGTGGTGTGCAACATTTGCAATAAAGAATTGTGCAGTAAATATTTTCTTCGCGTCCATAAGCACAATACCCATGGTATTGTCGACGAAGGCACAGTTGGAGGAGCAACGTCCAGTTCGATAAAACCTGAAAATTTCGAGTCATCTAATTCCGAAGACCTCGCAGCGTTGAAATCTAATGATCAACTTGGAGATATGAGCCACAGATACTTTTCACACTTTACTGAAGTTTGTCCTGTTTGCGGCAGAAGATTTCGCAGCATTAAATGGTTGAAAGCCCATTTACTAGGTGATCACGGTAAGGTCGGTGTTAACAAGTGGCGCGAATTAGAACAACAGTATCAGCAAAATCCAACAACTGGGGCGAAAAAATTCCCTGGAAATTCTTTGATGAATCGTCCTGTCCAGCCAAGCCCGAATTTAAAGATCCCAAATGGATTTGATATTGCCCATCACCTAAAGCCAAACGACTATGGGGCAAGTGTTGGTAAACAAGTGTTGTCTTCATTATTGGGCAACGGTGAAGATCAGAATAAAACCTACCGTTGCTCTTTTTGCAATTTTATAACGCCAGTTCTCTCGTTCTTGTTTTTGCACGAAAAATCTCACTTACCTATCGATAACATTAACTTAGAGCCTCTACAGTGTCCAATCTGTTCTCAAGGATTTACCCAACCAGAAATGCTACATCATCATTTGGTGGCGCGTCATCAAGTCACAGGAATGCAGATCCCGTTATCGATCATCGCGAACCAAGCTAATCTGTCTTTGGAAGGTAATCAAGTTGAACGCGATGGCTCTGATCATCAAGAGTCTTCAGGAGGGATCGAGGAAAATAACAAACATGGCAATGTTTTTCCAGCACAAACAAATTTTGATCCAATTAAGAACAATCGCGACGACCAGAGTTTAAATTTGGGAGCAGTTAGTGCCACAACAGCTACAGCAACTATTTTGGTGACACCACAAGTTGCATACAAATGTGCTCAATGTGGTCTAGCGACGACCAATTTGAATCGCATTAAGAAGCACGTTAAAAAAGATCACAAGTCAATCGGTGATCCGGCGGATAATGTTATCGCAGAGCTGACCAAAACTCTGCACGATCTTGCGAATAAACACAAAGTACCTGTTAGCTATGCAATACCCCAAGATACTAATTCAAATCCAGATACCGGCACAATAATGCAACCATTTATCATTGAGGAGAAAGATTGCGGCTTCAGCAGTGATGATAGCAGAGGTGAAAAAAAATTCTCACCTGTTTTAATTTATCTACCTGTACGTACGCGAGTTACCGGTGTCCTTACGACTTCCTTTACACTTAGTCCTGCTTAA
- Protein Sequence
- MTSTMTRERMLMPPSNELDSECSSGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLRRRLQTDDNLDSSSPKKRRKQTTPVRVPATLITTGDQMASEEEDDNNDDNGLVDEIDDLEGEIISAAHESRTERESDDEFIDKGKPTTLVSDQGMSKDENLNTEFRCLLCGSLFEDKDTLLRHRESEHDTNNLTRQSITQSPLSQNSLLPVAVKIEQQDESSDNPVNLSSGFNLNNFTNTWVTGATQQAQIQESEWSSQNSLMISGQLSCLPYSNALTQYLPIPTFPMTESGQLPRNVVGGSAPIRIFNPDAYCELCNKEFCNKYFLKTHKANKHGIYIDQPSSSTPGANDNGLLSYPNSLFPSVNVKIEPQQQQPQLQLSQQQKLETPEISPVSMIPTIPCDICQKKFKNEELLKKHKQKIHVEQISDHTDSQSLSATGLSEDDCREMPSFNASPSNIEALVKQEYGIEQEDAKFMPAPRQFSPQLCQQLRECGFSVDKLRSLGVINPDVFCELCCKEYCNKHFLRIHKIKRHGILMQSNGKSPNNPGAAASWHQIQTSPLNLIVSDAPAGSESTDKSEDYECKPCSIRFQTMGLYEMHKSKIHDIEEPKSPIGNMETEEIDSDQQPRPDTISQNLQNLQTMILQLNGLKPGNRPIVCGICSRECESKLALKTHMSLEHGTNILEESLSPSQQMIDSSFLTGFSTFCTLCEKDFRTPESLKQHLAEDHGHSTILTSNNNLSNVPQISTPAPTNQLPGPSIPPPADKKLSSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGSQIGGVVCNICNKELCSKYFLRVHKHNTHGIVDEGTVGGATSSSIKPENFESSNSEDLAALKSNDQLGDMSHRYFSHFTEVCPVCGRRFRSIKWLKAHLLGDHGKVGVNKWRELEQQYQQNPTTGAKKFPGNSLMNRPVQPSPNLKIPNGFDIAHHLKPNDYGASVGKQVLSSLLGNGEDQNKTYRCSFCNFITPVLSFLFLHEKSHLPIDNINLEPLQCPICSQGFTQPEMLHHHLVARHQVTGMQIPLSIIANQANLSLEGNQVERDGSDHQESSGGIEENNKHGNVFPAQTNFDPIKNNRDDQSLNLGAVSATTATATILVTPQVAYKCAQCGLATTNLNRIKKHVKKDHKSIGDPADNVIAELTKTLHDLANKHKVPVSYAIPQDTNSNPDTGTIMQPFIIEEKDCGFSSDDSRGEKKFSPVLIYLPVRTRVTGVLTTSFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00381410;
- 90% Identity
- iTF_00378314;
- 80% Identity
- -