Crub004722.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia rubecula
Gene Symbol
-
Assembly
None
Location
scaffold:10209-16500[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0013 0.14 13.0 2.8 2 23 244 265 243 265 0.96
2 18 0.00015 0.016 16.0 1.0 2 23 272 293 271 293 0.97
3 18 7e-05 0.0073 17.0 2.4 1 23 306 328 306 328 0.99
4 18 0.00059 0.061 14.1 6.2 1 23 334 356 334 356 0.99
5 18 0.0003 0.031 15.1 3.7 1 23 362 384 362 384 0.99
6 18 0.0038 0.39 11.6 2.0 1 23 454 477 454 477 0.94
7 18 0.00049 0.051 14.4 2.0 1 23 534 556 534 556 0.99
8 18 0.00022 0.023 15.5 1.3 1 23 562 584 562 584 0.99
9 18 0.00062 0.065 14.1 2.6 1 23 590 612 590 612 0.99
10 18 8.3e-06 0.00086 20.0 1.0 1 23 618 641 618 641 0.98
11 18 0.0026 0.27 12.1 2.6 1 23 647 669 647 669 0.99
12 18 0.02 2.1 9.3 0.3 1 23 675 697 675 697 0.96
13 18 0.0002 0.021 15.6 2.9 1 23 703 725 703 725 0.98
14 18 0.00043 0.044 14.6 0.1 1 23 731 753 731 753 0.98
15 18 0.0011 0.11 13.3 2.6 1 23 759 781 759 781 0.97
16 18 0.0028 0.29 12.0 1.7 1 23 787 809 787 809 0.98
17 18 5e-05 0.0052 17.5 0.7 1 23 814 836 814 836 0.98
18 18 4.7 4.9e+02 1.8 1.9 1 14 842 855 842 859 0.89

Sequence Information

Coding Sequence
ATGACTACTGCCAATAATTTTTCGTTCGAAAAATCATCTGATATAAATAATACTCAGGGCTGGGAAATTGACGATGACATGGAAGATGATTTAACATACCATTATTCAAATTTAACACAAATTGACTCGAATGCTCCTAGTAGTATTTATGAGAATTTTAAGAACAATGATGATTTACCCAGTCAGAAATTTTTTTTCAAATCAGATCCACTTGAGATAGAAGATGAAAATTCTTCTGTAGATCCATTGGATCCTTTAGAAGTGGGAAATGATTGTCATTATGAAGATGCAATGAATATAGACCCTTTTTTTGATATAAAAGAAGTATACGATTCTAATTTATCGGCCAACAACTGTGTTAATATTGATGAAAGTTTATTTGTGATCAAAAATTTAAATCAAGATTCAGATGAGTTTTATAATACACCTTCAGACATTAATTCATTTAGCTTGAAAGAAGATCGTTGGACAGACAAGTATAAAAAGAGAAGCATAAAAAAACAAGTTTATAGTTTAAAAAACAAAATTAACTGTTCGAAAAAAAGTAACAAGCTTAAGCAAGTATCCATAGTCAAGGATTGGGATATTATTTTAAAAAAGTACAATCCTGTTGTACTGCTTGAAAGAATTACGATTCCTAGACAAGCTTTGAGTTCATCAACTGCAGCAGCCAATCATAAAATTACCACAAAAAAAAGGTCAATTAGAAAATGTGAAAAATCTTTTCTCAACTGCGGACATTGCGAAGCGACTTTTACTTCGAAGGCCTGTTTAGATTCACACGTACGAACTCATGTGGACAACAAGCGGTCTACATGTCAAATTTGCTCTGTTAAGTTCGATCGTAGAAGTGATTTTGACCGTCACCTGCGAATTCATGCGCGTGAAAAAGAAGATTACTTTAAAGATGAGCAGTTTAAATGTGAATTTTGTTTTGCAGAATTTTCTAATAGAAGTCTGTTTCAAAATCACATGCAAAGTCATATGGGTGGAAGAGTATTCAAATGTCATGAATGCTCAGCAAAATTTCATCAGAAAAAAGACTTGACTTATCATTTGAGAATTCACACAGAAACTTGTTTATATGAATGTAAGAGTTGTTCAGTAACATTTGATAAAAAAAAGCAGCTACACATTCATATGCAGACTCATTTAAAAAAATTAAAAGTCGAACCTGGAATTGATTCAGCCTTACTTGATCAAGAAAATCATTTGATTAATCATGTAGATATGACAGAAAATATACTCGAGTGTAAAACTCTTATTGAATTTAAACAGGAAAGTAATTTTATTAATTGTGATCCCTTGGAAATTCCTACTGAAAATGAACAGTTGCTTACCCAAGCAGATACGAGTGAATTTAATTGTGCAATTTGTTCAAAAAAGTTTAATGAGAAAGATCAGTTGGATGATCATCATATGCTATTTCATACAGAAAAAGAATCATTACAATGTGAGGAAATTCTTTCAGTCGTATTTAATCAAAAAGAACATTTGAATGATAATATGGATAATCGAGCTGGATCTGAAGCTTCGTTGGAATTTAATCAAGAAAATGATTCAGTTGATCCTTTGGAAACTAACGATGAGAAAGAAGAATTCAAATGTGAGACTTGTTCAGAATTATTTAATCAAAAAGAACACTTGGATGATCACGCAAGAACACACGCGGAAAAAGATCAATTTAAATGCGACAACTGCTCTGCAAAATTCAATGAAAAGAATGATTTGGATAAGCATATGCAATCGCATGCAAATGATAAAACATACAAATGTTACGTTTGCTTAGCGAAGTTTACTCAAAAAAGTCATATTGACAGTCATATGCGTGTTCACTCTGACAAAAGGATGTTCAAATGTGACATTTGTCAATTAGGGTTCAAACGCAAAAGTACTTTAGATGATCACCTTCGAAAAGTTCACGAAGGAGAACTGCCATTTAAATGCGATCTTTGTTCAGCGAAATTTAATAAAATACACAGTTTGAATGTACACAAACGGATCCATTCGGAGGAAAAAGCTTTCGCATGCCATATTTGTGCGATGAAAGTAAAATCCATAGCTTCTCTCAGTCAACACATGCTTCTTCATACAGATTCAAAGCCTTTTTACTGCAATATCTGTAACATGAAATTCAAAGACAGAAAAGATGTGAAAACTCATAAGCTTACTCACCGAGAATTAAAGCCATTTAAGTGCGACAAGTGTCCAGCGGCGTTTGAATATGTAGGCTCCTTGAATAAACATAGAGAGATTCACACGGGAAAATTAATTTTTGAATGCGATCTTTGTCTGGAAAAATTCAAACGCGAAAATCATTTGCGCACGCATAAGCTTATTCACTCAATAAATCAATCGTTTCAATGTGATGTATGCTCGGCTAAGTTTTCTTTAATGAAACATTTAGAAGTTCATAAACAAATGCATATTCTAAGACCGTTTGTGTGTGAGTTTTGTCCAGCAACCTACGCCAGGGAATCAACTTATAAGATGCACATGAGACGTCATGCTAATAAACGATCATTTGATTGTGATATTTGTTACGAAGACTTTAAACATCCAGATTGGTGCCAGCACAAGCAGGAAAAAGGTGATTAA
Protein Sequence
MTTANNFSFEKSSDINNTQGWEIDDDMEDDLTYHYSNLTQIDSNAPSSIYENFKNNDDLPSQKFFFKSDPLEIEDENSSVDPLDPLEVGNDCHYEDAMNIDPFFDIKEVYDSNLSANNCVNIDESLFVIKNLNQDSDEFYNTPSDINSFSLKEDRWTDKYKKRSIKKQVYSLKNKINCSKKSNKLKQVSIVKDWDIILKKYNPVVLLERITIPRQALSSSTAAANHKITTKKRSIRKCEKSFLNCGHCEATFTSKACLDSHVRTHVDNKRSTCQICSVKFDRRSDFDRHLRIHAREKEDYFKDEQFKCEFCFAEFSNRSLFQNHMQSHMGGRVFKCHECSAKFHQKKDLTYHLRIHTETCLYECKSCSVTFDKKKQLHIHMQTHLKKLKVEPGIDSALLDQENHLINHVDMTENILECKTLIEFKQESNFINCDPLEIPTENEQLLTQADTSEFNCAICSKKFNEKDQLDDHHMLFHTEKESLQCEEILSVVFNQKEHLNDNMDNRAGSEASLEFNQENDSVDPLETNDEKEEFKCETCSELFNQKEHLDDHARTHAEKDQFKCDNCSAKFNEKNDLDKHMQSHANDKTYKCYVCLAKFTQKSHIDSHMRVHSDKRMFKCDICQLGFKRKSTLDDHLRKVHEGELPFKCDLCSAKFNKIHSLNVHKRIHSEEKAFACHICAMKVKSIASLSQHMLLHTDSKPFYCNICNMKFKDRKDVKTHKLTHRELKPFKCDKCPAAFEYVGSLNKHREIHTGKLIFECDLCLEKFKRENHLRTHKLIHSINQSFQCDVCSAKFSLMKHLEVHKQMHILRPFVCEFCPATYARESTYKMHMRRHANKRSFDCDICYEDFKHPDWCQHKQEKGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00382061;
90% Identity
iTF_00380547; iTF_00379083;
80% Identity
-