Crub009982.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- scaffold:132-3356[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.4e-107 1.7e-102 343.1 37.0 3 300 34 327 31 327 0.94 2 3 0.0046 1.1e+02 2.3 2.7 122 171 327 376 325 380 0.90 3 3 0.027 6.2e+02 -0.2 6.0 193 238 357 401 346 402 0.60
Sequence Information
- Coding Sequence
- ATGAATACAATGGAGTCAGCAATAACTGGTCGAAGGCGTGCTGCTAGTCGGCACTCTGCTGAGGATCAAGCTCTCGATCAAATAGCAAAAGAGGCTGGAGAAAGATTAGCAGCACGAAGACAAGCAAGGGCCGAAGCACGAGAAATCCGAATGAGAGAGTTAGAAAAACAGCAAAAAGAAGCTGAACAAACCGCTGATCGTGTTTACGATATGTGTAATGCTGACGGAACAAGGACTTTGAGGGTAACACCAGATCCTATAAGGGTTTCACGCTTATTAACAAATTCAAATAATTTTCAGTCAAGTCGTAGGTCTTCCGAAGATTCCTTAGAGGATGCTGGTCAAAGTAGAGATTTAAGATTAGAGCTTAAAGAGCTTGAAGAAAAATTTAGAAAAGCAATGATTGCTAATGCTCAACTGGATAATGAAAAATCGTCATACGTTTATCAAGTGGATTTACTTAAAGATCAATTAGAAGAATCGGAAGAATCCGCCGCTACATTGCGACGAGAGCTCAGGGAAAAAACTAGTGAGGCTAAATTATTGCAACGTGATTGCCAACGGTTGAAAGAGGATTTTGAAATGTGTAAAACATTACTGGAGGAACGAGATAGGCTTATAGAAGAAAATGGATTGGTAATAATTGAAGACGAGGTCAGTGATGACGAAGAAGCAGAAACAACTAATGGATTTGTAAATCGTAAAAAAAAAGTACTAGTCAGTACGGAAGCTGCTGAATTGTTACAAAATGCTGGCGAAGGATCTCTAGATGTTCGGTTGAAAAGGTTTGGTGCAGAGAAAAAAGAATTACAAGATGAAATCCGACATCTAAGACTAGAATTGGAAGAAGCCAAGAGTCGATTAAGATCTGAAAGATCGTCTGGATCAGTATTAGACTCAGAAGACGTCCAAAGGGAAGCAAATAAATTGTTGGCAGATTACAAATTCAAGTTACAAAAAGCCGAACAAGATATGTCGACGTTACAAGCAACTGTCGCGAGATTAGAGAGTCAAGTTATTCGTTACAAGTCAGCGGCCGAAACTTCTGAGAAAGCCGAAGACGACTTGAAGGTTGAGAAGCGGAAATTACAGAGAGAAGTAAGAGAATCACAGAGTCGTGTTGAAGAATTAGAAACAACAAATTCACATTTACAGAGACGATTAGATAAATTGATAAAAGCAAAATCGGCACTTTTGAAAGAGCTCTGA
- Protein Sequence
- MNTMESAITGRRRAASRHSAEDQALDQIAKEAGERLAARRQARAEAREIRMRELEKQQKEAEQTADRVYDMCNADGTRTLRVTPDPIRVSRLLTNSNNFQSSRRSSEDSLEDAGQSRDLRLELKELEEKFRKAMIANAQLDNEKSSYVYQVDLLKDQLEESEESAATLRRELREKTSEAKLLQRDCQRLKEDFEMCKTLLEERDRLIEENGLVIIEDEVSDDEEAETTNGFVNRKKKVLVSTEAAELLQNAGEGSLDVRLKRFGAEKKELQDEIRHLRLELEEAKSRLRSERSSGSVLDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAETSEKAEDDLKVEKRKLQREVRESQSRVEELETTNSHLQRRLDKLIKAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01003522;
- 80% Identity
- -