Crub001934.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- Poxn
- Assembly
- None
- Location
- scaffold:67-5556[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-41 5.1e-38 130.1 0.9 1 74 14 87 14 92 0.97 2 3 6.2e-05 0.14 12.4 0.0 102 125 88 111 86 111 0.92 3 3 4.6 1e+04 -3.3 0.0 43 66 303 325 295 328 0.56
Sequence Information
- Coding Sequence
- ATGTACTTATACTTTACTGACTTACCCGGTGATTTTTCAGGTCAAGCAGGAGTCAACCAGCTGGGAGGTGTCTTTGTAAACGGACGTCCGCTTCCAGACTGCGTTCGACAAAGGATTGTCCAATTGGCACTGGTTGGCGTCCGTCCTTGCGATATCTCCAGACAATTGCTCGTTTCCCATGGCTGTGTTTCCAAGATATTAACCAGGTTCTACGAAACGGGGAGCATCAGGCCTGGCAGCATAGGTGGCAGCAAAACTAAGCAATTGGCAAGACAAGGAGCTTGCGATCCCCAAAGTTTGCCCTCGGTTTCTTCCGTCAATAGGATTCTTAGAGGCGGAGGATTGCACACGGATCATCCGATTGACGCTGGAGCCTCCGGAAGTTATCCAGGACATGTGTCAGGAAATGAATCCAGAGAATCCCTCATGAGAACGGATTATCAGCTGTTCTATCCCGGCTCACTGGGACCGCTCCACATATCCACCAACGGATCAACTGGAGCCTCCGGAGCATCCACCTGGAATCCTGGATTCTACTCCTCGCTTTATCAAGCGACGACATTGCACTTGCATCATGGAATGCAGTCCTTTACATCTTTAGAAACCGAGCGGCTTTCCGAGCAGCAGAACTCCCAGAACCAAGAACTAAAATCCAGCAGTTCAAGTTCCATGGCGGGAAGTGACGATTCTCTGGACAAAAGCGACCTGGACGAAGTTAATGAGTCCCAGGACTTCAAACCCTTTCAGAACTTGCCCACAATCTTAGAACTCGGGCAGAAAATCGGCAGCGACCGGAGTGCGTTTGTTCGACACGGAACTCCCGGTTCCGTTTCTAAAGAAAGTTCCGAGAACCCGCAACCAGCGCCACCACAGAGAAAGCGGAACCCTTATTCAATAGAGGAACTACTGAAGAAGGACGAAAATGTCGTCAGCAATAAGCGACGCGTTATTGACACTGGAGTTGTCCAACCTTGTGGAATTGTCGTTGACGAAAGGTTGTAA
- Protein Sequence
- MYLYFTDLPGDFSGQAGVNQLGGVFVNGRPLPDCVRQRIVQLALVGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSIGGSKTKQLARQGACDPQSLPSVSSVNRILRGGGLHTDHPIDAGASGSYPGHVSGNESRESLMRTDYQLFYPGSLGPLHISTNGSTGASGASTWNPGFYSSLYQATTLHLHHGMQSFTSLETERLSEQQNSQNQELKSSSSSSMAGSDDSLDKSDLDEVNESQDFKPFQNLPTILELGQKIGSDRSAFVRHGTPGSVSKESSENPQPAPPQRKRNPYSIEELLKKDENVVSNKRRVIDTGVVQPCGIVVDERL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377962; iTF_00378706; iTF_00379572; iTF_00380246; iTF_00381789;
- 90% Identity
- iTF_00377962; iTF_00378706; iTF_00379572; iTF_00380246; iTF_00381789;
- 80% Identity
- -