Cfla007537.1
Basic Information
- Insect
- Cotesia flavipes
- Gene Symbol
- LITAF
- Assembly
- None
- Location
- scaffold:5051-12668[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.2e-13 4.2e-09 36.4 0.1 4 39 51 86 48 101 0.85 2 4 1.2e-11 7.2e-08 32.4 0.1 2 54 138 189 137 191 0.81 3 4 6.2e-13 3.6e-09 36.6 0.2 2 38 263 299 262 308 0.93 4 4 5.8e-20 3.4e-16 59.1 13.7 2 69 358 425 357 426 0.91
Sequence Information
- Coding Sequence
- ATGGATAAACATGGAGTACCTCTTGGACCGGGTGTTCAAATACCTCCACCTGGATTCGCTCCACCACCACCTTACAGTGCTGGACCTCCACCACCTCCTCAAGGACCTGGAGTAATTTTTATCCAGCAAACAACCTTTGGACCAGATACAATGAGATTGAACTGTCCTCATTGTCACGCAGATATTTCCACAAGAGTAGAAACAGAACCGAGTACCAAAACTCATCTCTTTGCTCTGCTGCTTTGTCTTGTCGGGAAGTCACTTGTTATGATCATCTCTAAATATCCGCTGCTTGGTGAAGAAACATTACTGTCCATCATGCAGCCAATACCTCGGAAGCTACGAGAATTAATATTTCACATTTTAATATTCCGTGTTACTGTAATCCAGCAAAATATTAATTATGGCTCGGAATCAATGCGATTAAATTGTCCACATTGTCACGCAGATATTTCAACAAAAGTTGAAACCGAAGCAAACACTAAAACTCATCTAATTGCTCTATTGCTATATGTTGGATTTGCTTACCATGTGTTTATTGCAATGACAGTTGTTTGGTTAAAAAACACACCTGCCCTTCTTGCAATCAAAGTGTCGCCTTATCCACCACAGCCGGGATTTACAAAGCTAATTTATCCGAATCTTCAGCCAGATTTTTCGCAACCATCTTATCCGCATCCCACGGCTCCAGAAGTTCCTCCACCGCCTCCATATACTTCGGAGCCACTTCAGACCACTGCTGAACCTGTTGTCACTCTAGTTCAGCCAGCCGTAAATTATGGCCCTGAATCAATGCATGTCACTTGTCCTCATTGTCGTGCTGAAATTTCAACGAGAGTTGAAACTGAACCAAACTTGAAAACTCACATGATTGCATTGCTACTCTGTCTCTTCCACTCTGATTTATCACAATTTTTTTCTTCTCAGATGCTGCCAATGTATCCCTATCCTGGACAAGCACCATCAGCACCAGAATTTAATCCTCCTCCTGCTTATAACCCCGATTATCCACCAGTTACACATGCACCGGGTCCAGTTGTTACTCAAATAAGACCTGTGACTTTTGGTCCCGATTCAGTGCGACTAATCTGCCCTCACTGCAGCGCCGACATTTCAACAAGAGTTGAAATTGAAGCAAGCACCAAGACTCATATTTTTGCCATGATACTTTGTCTTCTAGGATTATGCCTCTGTGTTCCATGCGCGTACTGTGGGGACTGCTTCGCAGCAGCTAACCATTATTGTCCTTGCTGTAATGCACATCTTGGATCCCATGAACCTTAA
- Protein Sequence
- MDKHGVPLGPGVQIPPPGFAPPPPYSAGPPPPPQGPGVIFIQQTTFGPDTMRLNCPHCHADISTRVETEPSTKTHLFALLLCLVGKSLVMIISKYPLLGEETLLSIMQPIPRKLRELIFHILIFRVTVIQQNINYGSESMRLNCPHCHADISTKVETEANTKTHLIALLLYVGFAYHVFIAMTVVWLKNTPALLAIKVSPYPPQPGFTKLIYPNLQPDFSQPSYPHPTAPEVPPPPPYTSEPLQTTAEPVVTLVQPAVNYGPESMHVTCPHCRAEISTRVETEPNLKTHMIALLLCLFHSDLSQFFSSQMLPMYPYPGQAPSAPEFNPPPAYNPDYPPVTHAPGPVVTQIRPVTFGPDSVRLICPHCSADISTRVEIEASTKTHIFAMILCLLGLCLCVPCAYCGDCFAAANHYCPCCNAHLGSHEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -