Cfla006358.1
Basic Information
- Insect
- Cotesia flavipes
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:3259-4873[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0012 4.3 7.5 1.1 15 46 113 144 108 147 0.80 2 4 1.5e-05 0.052 13.6 0.0 22 46 148 172 145 176 0.92 3 4 0.0024 8.3 6.6 0.1 22 45 176 199 173 202 0.86 4 4 0.0096 33 4.6 0.0 21 45 202 226 199 232 0.74
Sequence Information
- Coding Sequence
- ATGGACATAAATAATTCTCCATTTGAAATGGTAATTATAAAAATTGAAAAATTCGAATCCGAGGATTGGCTCAACGGTGAGGAAGCAGGCGATAATCTTGCAGGAAAGAATTATAATTGCGAGTACCCGATTGATGTTAAAAAAATTAAAGAAGAGAAACTTGAAACTCCATTACACCTAAAATACACCTGTGATAAACCTGATTTAATAAAAAAAGAAAATGAGGATCCTGATCAAATTTCTATAAAAGAAGAATTTTCAATTGATACTAATCTAGTAAAGACAGAAAAAGTTTCTCTGACTCCAGAAGACATTGAATTAATCAAAGCAAAACACCCTACGCAAAAAAACTCCGAAAAAAGACCTTACAAGTGCGACGTATGCTCGCATAATTTTCGTCAGAAAAATCAGATCCGCATTCACATGAAAATTCACCTTCGAGAGCAACCTTACTCCTGTGACATTTGCTTTGCTACTTTCAACCTCAAAGGTAATTTAAGCACACATTTAAAAATCCACGAGGAAAAACATCCTCACACTTGCAATATTTGTTCCGCTCAATTTAAAACGGAGCAGCTTCTCGACAACCACTTGCAAAATCATAATGAAAAATCGAGTACTTGTTACTTTTGTTACTCGAAATTTGGGAGTCAGAATCTTCTGAAGGATCACATGCGGATTCACGTGGCAGAAAAAATTCTAACATCTTATGACTAA
- Protein Sequence
- MDINNSPFEMVIIKIEKFESEDWLNGEEAGDNLAGKNYNCEYPIDVKKIKEEKLETPLHLKYTCDKPDLIKKENEDPDQISIKEEFSIDTNLVKTEKVSLTPEDIELIKAKHPTQKNSEKRPYKCDVCSHNFRQKNQIRIHMKIHLREQPYSCDICFATFNLKGNLSTHLKIHEEKHPHTCNICSAQFKTEQLLDNHLQNHNEKSSTCYFCYSKFGSQNLLKDHMRIHVAEKILTSYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00378273;
- 90% Identity
- iTF_00378273;
- 80% Identity
- iTF_00379916;