Basic Information

Insect: Cotesia flavipes
Gene Symbol: -
Assembly: None
Location: scaffold:20560-23836[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.13 13 6.5 0.3 6 21 12 27 6 28 0.85

2 11 0.0074 0.73 10.4 0.0 2 21 34 53 33 54 0.92

3 11 0.54 53 4.5 0.3 1 12 220 231 220 240 0.87

4 11 0.038 3.8 8.1 2.4 1 19 341 359 341 361 0.95

5 11 8.9e-05 0.0087 16.4 0.4 2 23 367 388 366 388 0.98

6 11 0.81 79 4.0 0.9 1 14 399 412 399 415 0.87

7 11 0.0013 0.13 12.7 0.0 2 23 434 455 433 455 0.95

8 11 3.4e-05 0.0033 17.7 5.2 1 23 491 513 491 513 0.99

9 11 1.7e-06 0.00017 21.8 4.3 1 23 519 541 519 541 0.98

10 11 0.0018 0.18 12.3 7.8 1 23 547 569 547 569 0.98

11 11 2.6e-05 0.0025 18.1 0.8 1 21 575 595 575 596 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.13	13	6.5	0.3	6	21	12	27	6	28	0.85
2	11	0.0074	0.73	10.4	0.0	2	21	34	53	33	54	0.92
3	11	0.54	53	4.5	0.3	1	12	220	231	220	240	0.87
4	11	0.038	3.8	8.1	2.4	1	19	341	359	341	361	0.95
5	11	8.9e-05	0.0087	16.4	0.4	2	23	367	388	366	388	0.98
6	11	0.81	79	4.0	0.9	1	14	399	412	399	415	0.87
7	11	0.0013	0.13	12.7	0.0	2	23	434	455	433	455	0.95
8	11	3.4e-05	0.0033	17.7	5.2	1	23	491	513	491	513	0.99
9	11	1.7e-06	0.00017	21.8	4.3	1	23	519	541	519	541	0.98
10	11	0.0018	0.18	12.3	7.8	1	23	547	569	547	569	0.98
11	11	2.6e-05	0.0025	18.1	0.8	1	21	575	595	575	596	0.93

Sequence Information

Coding Sequence: ATGGGATCTCCAATTATCATGTGTCCGATGTGCTGCAACGAGACGTTTGAAAATTTACAGTCACTGAGAGAACATTTACTGAGTATGACTAATAATTTATACTGCCCAGGATGCTCTCAGAGGTACGACACAATGGATGATCTTATTCAGCATCTGGAAAAGTGCACTGATGATGATAGTCATCAAAAAAGCGATGACAGCATGTCAATTAAAACGGACGGTCGCAATTTAAAAGCAAACAAAAATGAAATTCTTATGGACACCAATGTCAGAGAAATGAATTTTTTGAATCCAGTTAACAAGCAGCAGTTGCTGATATCTGATACGCGAACTTTAGAAGTTGATGAAAATGGAGACATAAAAGTTGTAGAGCCATTAGAGGTACCAAAAAAGCAGCTCAAACTAGATAACATCCAAGAAGCGGACAAAGATTCTCCGGTGATAAGTATTCCCGAGGTTTTAAACACTCAAAATAATAATGAGAACGTTCTAACGATGTTGCCCGATGACTCTGTTGAGTTTCTGGACTCAGATCAGAGTTTGTTAGAAATCCAGCATCAAGAAGGTGAATTGAATGATGATGAATTTATGAAAGTCAAGCAAGAGTTGTGCGAGGTAAAAATCGAGAAGGAAGAAGAGATAGACTCTTCGACTGTCTACAACTGCAGCAGCTGTGGAATAAGCTTCAACTCTGTGATCGACCACATAAAAGAATACCACGAGGGCCAGGACGTGATCGTGGAGGTGAATGGCGACGGGACAACAGAAGAAGCGACCGAGAGCCAGCCGATAAAAGTCGAGGAAAAACCTCAGCGAGTGCACCCGCGCCAGAAGATGAACATCCTGAGGTCCGAGCCTACAGTCGACTCTGAAGGCCGCGCATTTGTGCGCAACGTTGTCCAGATCGAGGACTTCTGGGACAAGAAGGTGAAACCCATGAATTCCAAGATGATCGAGAAGTTTTTTGCAAATCCCGAGGCTCCGAAGGTTCCGAGGAAAAACGAGATTCCCCAGAGGATGTACAAGTGCAAGCAGTGCCTGGAACAGTTCTCCAAGCTCGCTGATTTTCGGAACCATGCTTGCTGCAACGGGTCCAATCAGTGCGACCACTGTGACCAGGCTTTCGCTACTGTTAAAGCACTCCAGTTGCATGTGAAAGTCCACGGCGCTTGTCTGTCCCCTTCTAAGAAGAACTTTGTCTGCAGGACCTGCGGGACTCAGTTCGCGTCACATAAAAGTAAAACATTGTCGGAGTCATATCGAGCTGCTCACATGTCGCTTCACGCTGGAGATACTGTAACTTGCGCTGTCTGCAATCGGAAGTTCGACTCAGCAGATAGTCTGGCTATGCATGCAGCGGTTCACCCTGAGCTGGGTGTCCAGGCGCCAGCGAACCAGTCAGAAGTTTCCGAGCAGCAGTCGCCTCTCGGAGAAGCTGCGACGGAAGATGATCAGGATCAGACGAAGCCGTACAAATGTCAGCACTGTGGAAGAAGATTTACTAGGCCGCATGAGAAAGTAAAGCATGAGCGGATACATACTGGAGAAAAGCCGCATGTCTGCGAAGTCTGTGGAAAAAAATTCCGAGTATCATACTGTTTAACTCTGCACATGCGAACACACACCGGAGTCCGTCCGTACGAGTGCCAGCACTGTCATAAGCGTTTCAAAGCATCCTCGGTGTACAATCACCACCTGTTGACCCACGGCGAGGAGCGGGCGTACACTTGCCCTCACTGTCCCAAGAACTTCAAAACCCGTGTGCAATTAGCGGGTCACAAAAATAGATTTGAAAGTTTATAA
Protein Sequence: MGSPIIMCPMCCNETFENLQSLREHLLSMTNNLYCPGCSQRYDTMDDLIQHLEKCTDDDSHQKSDDSMSIKTDGRNLKANKNEILMDTNVREMNFLNPVNKQQLLISDTRTLEVDENGDIKVVEPLEVPKKQLKLDNIQEADKDSPVISIPEVLNTQNNNENVLTMLPDDSVEFLDSDQSLLEIQHQEGELNDDEFMKVKQELCEVKIEKEEEIDSSTVYNCSSCGISFNSVIDHIKEYHEGQDVIVEVNGDGTTEEATESQPIKVEEKPQRVHPRQKMNILRSEPTVDSEGRAFVRNVVQIEDFWDKKVKPMNSKMIEKFFANPEAPKVPRKNEIPQRMYKCKQCLEQFSKLADFRNHACCNGSNQCDHCDQAFATVKALQLHVKVHGACLSPSKKNFVCRTCGTQFASHKSKTLSESYRAAHMSLHAGDTVTCAVCNRKFDSADSLAMHAAVHPELGVQAPANQSEVSEQQSPLGEAATEDDQDQTKPYKCQHCGRRFTRPHEKVKHERIHTGEKPHVCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCHKRFKASSVYNHHLLTHGEERAYTCPHCPKNFKTRVQLAGHKNRFESL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00382070; iTF_00378224; iTF_00379088;
90% Identity: iTF_00378224; iTF_00382070; iTF_00379088;
80% Identity: -