Basic Information

Insect: Cotesia flavipes
Gene Symbol: -
Assembly: None
Location: scaffold:1340-3893[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00013 0.013 15.9 0.3 2 23 130 151 129 151 0.96

2 11 0.0064 0.63 10.6 3.2 2 23 218 239 217 239 0.94

3 11 4e-05 0.0039 17.5 4.4 1 23 359 381 359 381 0.97

4 11 1.6e-06 0.00016 21.9 0.8 1 23 387 409 387 409 0.98

5 11 1.1e-06 0.00011 22.4 2.1 1 23 415 437 415 437 0.98

6 11 1.3e-06 0.00013 22.2 1.6 1 23 463 485 463 485 0.98

7 11 1.7e-09 1.7e-07 31.2 0.9 1 23 491 513 491 513 0.98

8 11 2.5e-06 0.00024 21.3 3.4 1 23 519 541 519 541 0.98

9 11 7.5e-07 7.4e-05 22.9 2.2 1 23 547 569 547 569 0.96

10 11 2e-06 0.00019 21.6 3.9 1 23 575 597 575 597 0.98

11 11 4.7e-06 0.00046 20.4 3.0 1 23 603 625 603 625 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00013	0.013	15.9	0.3	2	23	130	151	129	151	0.96
2	11	0.0064	0.63	10.6	3.2	2	23	218	239	217	239	0.94
3	11	4e-05	0.0039	17.5	4.4	1	23	359	381	359	381	0.97
4	11	1.6e-06	0.00016	21.9	0.8	1	23	387	409	387	409	0.98
5	11	1.1e-06	0.00011	22.4	2.1	1	23	415	437	415	437	0.98
6	11	1.3e-06	0.00013	22.2	1.6	1	23	463	485	463	485	0.98
7	11	1.7e-09	1.7e-07	31.2	0.9	1	23	491	513	491	513	0.98
8	11	2.5e-06	0.00024	21.3	3.4	1	23	519	541	519	541	0.98
9	11	7.5e-07	7.4e-05	22.9	2.2	1	23	547	569	547	569	0.96
10	11	2e-06	0.00019	21.6	3.9	1	23	575	597	575	597	0.98
11	11	4.7e-06	0.00046	20.4	3.0	1	23	603	625	603	625	0.99

Sequence Information

Coding Sequence: ATGTTTATTGTTACAAAACAAATAGATAGTGAAAATATCAGTAAACTATGTCGAACTTGTTTAAGAGAAGATGGAAAAAAAATGATTTGTCTGTTTGTTGGTCCAGCTGAGACGTCACTCGCTGCGAAATTACGATCTTTGTCTTGTTTAGAGGTGTGGCAGGGAGATGGATTGCCGGAAAAATTATGCGACCGCTGTGTGACAAGAGCAGAGTCAGCTCTTTTATTTCGAGAGCAGTGTCGAGCGGCTGACAGAGCATTGCGACAAGCAGCAGCACGGTATTATCAGCAGGTTTCAGGACTCGCAAATTATACTACTGTATCAGGTTGCAAGTTGTATCAGCAGAATCACGGATTAACTCCAATTGAAAGCTCTCAGAAAACACTAAAATGCAGCGACTGTGGTGCTGTGTTTATGAACTATCAGGAATTACAAACTCATAGTCGCTTGCACAATCCTTTTGGTCAAGAGGCGGGTTCTCTTTCGCACATGCATATCGTCGAAGCACAAAATCCGTACTTTAATTCAGATACTTCAATTTCTTCGTCGGTAATTGACAATAATCATGAATCAATTGTAAATTTAAGTAGACCCAGCCCATTGCCAGCAGCAGAATTATCAAGAAAAAATGACAGACCAGCATGCGCTCTTCATTGCTCTCTCTGTAACCACACATTTCCTGACAGAAATCAGTTGATCAGTCACAATTTATCTCACTGTGCTAATAACGAAGACACTTCTTGCGACAGCATAGAAATTGGAGATGATTCTAATCCGATTGCGGAAAATTTGAGTTTCCAAGCAATTGATCTTGCTTATCCGCGACATAATCCATCAATTGACTTCAACTATTCCGAAAATTTAAACCTTGCGTCAGCTGATCCAACAACTAACAATTTAGTCAGTACAAATTTGGAGATACAAAATTCTTCCTCTAATTTATCAGATCACATAATTTCCTTCCCGAGATTTTCTGATCAACTTAACGATCAAGCTCTGAACAATGAGGAAAATTTAGCAAGTAATGAGAATTTACCTGTACAAATAAATTCTGAACATGAGGTTGATAAAAAACACAAATGCTTGACATGCAATAAAACTTTTGCGCAAAAGTCGAAATTAAAAACTCACGAATTGTCCCATACTGGCGAGAAACCATTTCGATGTGTCAATTGTGACAAAGCTTACACTTCAAAGAGTAAATTAAACGCTCATGTGAGATTACACACGGGATCTAACGTTCATCGGTGTGATGTTTGTCAAAAAACTTTTTCTTATCCTTCTTATTTGGTAGAACATTTAAAAACTCACAGTATTAATAATTCAAATGGTAATAATAAAAATGAGATTAAAAATAATGGAAATGCTGATTTGAATTCAGAAAAATTTGAGTGTTCAATTTGTGGTAAAAAATTTCGTATAAAAAAAAATTTACGGCTGCATTTGAAACTACACAGTGGAAAAGATTTATTTAACTGTGAAATTTGTGATAAAGTATTTAGTCAAAAATATAATCTTAAAGTTCATATGAGAATTCACAAGCGAATAAAAATCCACAAGTGCGAGTATTGCAGCAAGTCTTTCAGTGAAAAGGGTAATTACAAAGAACACTTGAGAATACACACAAAAGTTAAGCCATTTGTGTGTAAATTATGCAATAAAGCTTTTTCACAATCTAGTCATTTAAAAAATCATGAAGCTTCTCATGACAATCAACGACCTTATCAGTGTCGATTGTGCGGTAAACGGTTTAAACTGTCATCACATTTGAAAAGACACGTTAATTTACATACTTCAGTTAAAAACTTCAAATGTATGCAGTGTGATCAAATGTTTACTCAGGCCTTCAGTCTTAAAAGACATTTAAAAAAGCATAATGATGTTACTTAA
Protein Sequence: MFIVTKQIDSENISKLCRTCLREDGKKMICLFVGPAETSLAAKLRSLSCLEVWQGDGLPEKLCDRCVTRAESALLFREQCRAADRALRQAAARYYQQVSGLANYTTVSGCKLYQQNHGLTPIESSQKTLKCSDCGAVFMNYQELQTHSRLHNPFGQEAGSLSHMHIVEAQNPYFNSDTSISSSVIDNNHESIVNLSRPSPLPAAELSRKNDRPACALHCSLCNHTFPDRNQLISHNLSHCANNEDTSCDSIEIGDDSNPIAENLSFQAIDLAYPRHNPSIDFNYSENLNLASADPTTNNLVSTNLEIQNSSSNLSDHIISFPRFSDQLNDQALNNEENLASNENLPVQINSEHEVDKKHKCLTCNKTFAQKSKLKTHELSHTGEKPFRCVNCDKAYTSKSKLNAHVRLHTGSNVHRCDVCQKTFSYPSYLVEHLKTHSINNSNGNNKNEIKNNGNADLNSEKFECSICGKKFRIKKNLRLHLKLHSGKDLFNCEICDKVFSQKYNLKVHMRIHKRIKIHKCEYCSKSFSEKGNYKEHLRIHTKVKPFVCKLCNKAFSQSSHLKNHEASHDNQRPYQCRLCGKRFKLSSHLKRHVNLHTSVKNFKCMQCDQMFTQAFSLKRHLKKHNDVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00382053;
90% Identity: iTF_00380544;
80% Identity: -