Ccon011339.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:1934879-1944200[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00033 1.2 10.0 0.1 19 44 227 252 219 256 0.82 2 8 0.0018 6.6 7.6 0.0 21 46 257 282 252 286 0.90 3 8 0.55 2e+03 -0.3 0.0 23 48 385 410 381 414 0.84 4 8 0.015 56 4.7 0.1 21 52 411 442 403 444 0.86 5 8 0.023 83 4.1 0.0 26 46 498 518 492 525 0.88 6 8 1.5 5.4e+03 -1.7 0.0 28 49 525 547 522 548 0.76 7 8 0.027 1e+02 3.9 0.0 21 52 599 630 593 632 0.87 8 8 0.31 1.1e+03 0.5 0.1 21 33 627 639 623 649 0.81
Sequence Information
- Coding Sequence
- ATGGAGAAGATGTCAATTAATACACCAAGAATTGAAGCAAATACCGACAGCAAGTCTTTTGCAACAATACCAGAGTCTAAAACTGAAGAAAGAAGTTTTAAGAATTTTGGGATTGATAATCCTTCAAACGATGAATTTACCTTGCATTTTTCTGAAAGTTCAAACGAAGATTTTGCTATTGTTGATCAAGTTGGCAAGATAGGATCTAAAAATGATGTTTCTCTTCAGAACTTAAAAAAAATAATTCCAAATACAGGAAAAATTTTAAATCAAGAGCAAGTTTCAATTCAAGATTTAGTTGAAATTTCTTCAATAATGAAACCCGAGGCTGTAAAAATAAAACGGCTTCAAAGACGTAAAAAGAGCCGCCAGGTTTTACCTTCCAGTAGTGACAGCTGCACACAAAAATTAAGTTCAAAGTCCCACGTGGAGAAGTTAGAGGAAAAACACATTCTAACTCACAGTGATTCAAAATCGTTTGTGTGTGAATTTTGTGACGCTAGATTTGTTCGAAAATACCATTTATACAAACATATTAACGGTGTTAAAAATAAAAAAATTTTTGAATGCGACACGTGCTCGAAAAAACTAGCAAAAAAGTGCGGATTGATTAAACATATTCAAAGGCATTCAAAAAAGAAAGACCGTCAAGTCAAAAAAAATAATGTCAAATCAAAAAAAATAAAGTCTCAAATTTTTCAATGTTCTATTTGTTTCTTCACATTTGTGGGTTCAAGAAGTTTAAGAAGACATGCGCGTGTTCATACGGGAGAAAAACCCTACGCGTGCGAGATTTGTTTCGAAAAATTTGCTCGGAAAGATTATTTGAAGCGTCATCTTCTCCTTCACGAGGAACAATATTTGTTTAATAAAATAGATCACTTGAAGAAGGAGACTTTTAAGTGCAATGATTGTTCCAAAACATTTATTGATGCTAATGAACTGAAAAGTCACCGTGAAATTCATAAAGACAAAAAACTAAAGTGTAAAACATTTGAGTGCGATGTTTTTTCAACTCAATTTACTCGAAAAGATAATTCGATCACTCATTTAAGCGTTCATGATAAATTTTCGCTTGTTTGCGAGGTTTGTTCGGAACAATTTGTTAAGAAAGTTGATCTAAAAGAGCACGTGAAAATTCACATGGATAAAAAACCTTTTATGTGTAAAGATTGCTTTAAATTATTTGCTGAAAGCGAAAAGTTAGAAGAGCACGTAAGAATTCATGATGAAGAAAAGCCAAATATTTGTGAGATTTGCTCGAAAAGATTCAAACGAAATGACCAATTGCTTCAACACTTGCAGTTTCATACTGAAGAGAAACCATTTGTGTGCGAAGTTTGTTCGGTAAGATTCGCTAATAAAAGGTCTCTGGTTATTCACTCAAAAACTCACAATATAGCTTTTAAGTGCAAGATTTGTTCAACGGAGTTCATTCGGAAAATTGATCTTGAAGATCATATGAAAAATCATGTAAATAAAAAGTCATTTAAATGCAGCGATTGCTTTGTGGTATTTTCTGAAAGAAATGAACTGGAGCGCCATCTTGAAACTCACGTTAAATATCAATCTCCGATTTGTGAGAAGAAATTCAACCGTAACAGTTGTCATAAACGAACTCATATTGAAAAAAAAACTTTTGAGTGTGATAATTGCTCTAAGAAATTCAATCGGAAATCTAGCATTTTTAATCATATGAAAAGTCATATGAAGAAAAAATTAATGAAATGTCTTTATTGCTCGGAGAAATTTTTGCAAAATAATCAATTAGAAAGCCACATGAGGATTCATACGAAAGAAAAGCCGTTTAAGTGTAAGGATTGTACTGCGATGTTCAAACGAAAGGATCATTTAGATCGACACTATCGAATTCATACTGGGGAAAAACCGTTTGTGTGCAAAATTTGTAAAGCCAAATTTTATCGGAAAGATTACTTGGCTAATCACGAAAAAAAAACATGTGGAAGATAA
- Protein Sequence
- MEKMSINTPRIEANTDSKSFATIPESKTEERSFKNFGIDNPSNDEFTLHFSESSNEDFAIVDQVGKIGSKNDVSLQNLKKIIPNTGKILNQEQVSIQDLVEISSIMKPEAVKIKRLQRRKKSRQVLPSSSDSCTQKLSSKSHVEKLEEKHILTHSDSKSFVCEFCDARFVRKYHLYKHINGVKNKKIFECDTCSKKLAKKCGLIKHIQRHSKKKDRQVKKNNVKSKKIKSQIFQCSICFFTFVGSRSLRRHARVHTGEKPYACEICFEKFARKDYLKRHLLLHEEQYLFNKIDHLKKETFKCNDCSKTFIDANELKSHREIHKDKKLKCKTFECDVFSTQFTRKDNSITHLSVHDKFSLVCEVCSEQFVKKVDLKEHVKIHMDKKPFMCKDCFKLFAESEKLEEHVRIHDEEKPNICEICSKRFKRNDQLLQHLQFHTEEKPFVCEVCSVRFANKRSLVIHSKTHNIAFKCKICSTEFIRKIDLEDHMKNHVNKKSFKCSDCFVVFSERNELERHLETHVKYQSPICEKKFNRNSCHKRTHIEKKTFECDNCSKKFNRKSSIFNHMKSHMKKKLMKCLYCSEKFLQNNQLESHMRIHTKEKPFKCKDCTAMFKRKDHLDRHYRIHTGEKPFVCKICKAKFYRKDYLANHEKKTCGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379071;
- 90% Identity
- iTF_00379071;
- 80% Identity
- iTF_00379071;