Ccon005835.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:8480733-8482860[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.2 4.6e+03 -1.5 0.0 26 45 111 130 103 135 0.84 2 8 0.00037 1.4 9.8 0.6 11 50 141 180 130 184 0.86 3 8 0.3 1.1e+03 0.5 0.2 26 44 185 203 180 207 0.88 4 8 0.00021 0.75 10.6 0.4 21 45 208 232 205 240 0.86 5 8 0.13 4.7e+02 1.7 0.2 21 44 236 259 233 263 0.82 6 8 0.016 57 4.6 0.2 21 45 264 288 257 291 0.88 7 8 1.4e-06 0.0052 17.6 0.4 21 52 292 323 287 325 0.85 8 8 7.8e-05 0.29 12.0 0.1 20 46 347 373 331 376 0.87
Sequence Information
- Coding Sequence
- ATGAATGCAGATTCTTTATCATTTGAAACTGTAGTTATAAAAGTTGAAAACAGTGACAAGGATTGGCAAGTGGAAAATAATTCTGACAGTCAAGGAATCAAAGATTCTAATTTCGATTATCCAATAGATATTGACGACGTAAAACTGGAGAAAATTGAAGATTCTTCAGAAGACATTGATGCACCTGATTTTATGCACAAAAATGTGGACAGTACCTCTTTAAAAAAACAATTATTCCTTGAAAATAATCAAAGTTCACTAATTACAATGAAGAAGAAAAATGAAGTGAAAAATTTGCATAAAAAATCAGAAATAAATATAAAAAATTACACCTGCGATCATTGTCAAGCGACTTTTGATAAAAAGTCAATAATTAGGACGCATATTAAGACTCACCAAGCAGACTTGTTCCATGAAAAGTCTCAGAATAAACCCCCAGAAACAGAGTCGGAAGAAAAACCATACTCTTGTGACGTCTGTCCCTCAAAGTTCCGTTTCGAAAGATATTTAAAACAGCACAAGCGAATAATCCACACAGAAAAAAAGCGTTTCTCTTGCGACAGTTGTTCCTCCTTATTCCGAACAAGAACTCATTTGAAAAGACACATGATTTGTCACACGAGAGAACAGCCTTACGCTTGCGACATCTGTAGGTCTCTGTTCCGGCGAAGAGGTAGCCTAAAAAAACACATGCTAACTCATAAGGAAGAAAAACCTTATGAGTGTAATATTTGCTCGTTGAAATTCCGGCACAGAGATTACTTGAACAGTCATGTTAGAATCCACTCGACGGAAAAACCTTTCGCTTGCAGCGTCTGTTCCTCCCAGTTCCGCCACAGAAGTACTTTGAACATGCACCTCAAGAGCCACGAGCAAGAGGAACCTTGTTTGTGCGCAATCTGCGAAGCTAAGTTTAGGAACAAGAAGAATCTTAGAGAACATATGAGGATTCATGTGGGAAATAAACCTCATAAGTGTGGACTTTGTTCTTCTAGGTTCTTGAAGAAAAGTCTTTTGGAAAAACACATGAGGGTACACACTAAGGAACGTCCGTTTTTGTGTAATATTTGTTCGTCTGATTTCCGGCAGAAAAGAGCTTTGGATCAACATATGAAAGTTCATTTTAATTAA
- Protein Sequence
- MNADSLSFETVVIKVENSDKDWQVENNSDSQGIKDSNFDYPIDIDDVKLEKIEDSSEDIDAPDFMHKNVDSTSLKKQLFLENNQSSLITMKKKNEVKNLHKKSEINIKNYTCDHCQATFDKKSIIRTHIKTHQADLFHEKSQNKPPETESEEKPYSCDVCPSKFRFERYLKQHKRIIHTEKKRFSCDSCSSLFRTRTHLKRHMICHTREQPYACDICRSLFRRRGSLKKHMLTHKEEKPYECNICSLKFRHRDYLNSHVRIHSTEKPFACSVCSSQFRHRSTLNMHLKSHEQEEPCLCAICEAKFRNKKNLREHMRIHVGNKPHKCGLCSSRFLKKSLLEKHMRVHTKERPFLCNICSSDFRQKRALDQHMKVHFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379854;
- 90% Identity
- iTF_00379143;
- 80% Identity
- iTF_00379143;