Basic Information

Gene Symbol
LZTR1
Assembly
None
Location
contig:18208540-18215693[+]

Transcription Factor Domain

TF Family
BTB
Domain
zf-C2H2|ZBTB
PFAM
PF00651
TF Group
Zinc-Coordinating Group
Description
The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3.9e-05 0.0065 17.3 0.0 2 38 352 391 351 406 0.88
2 5 5.6e-06 0.00095 20.0 0.3 48 107 434 515 424 518 0.82
3 5 4.1 6.9e+02 1.1 0.1 75 108 515 548 509 550 0.82
4 5 6.9e-18 1.2e-15 58.3 0.0 3 96 603 697 601 712 0.83
5 5 7.7 1.3e+03 0.3 0.0 77 101 712 736 707 744 0.79

Sequence Information

Coding Sequence
ATGATGGATAATAATATGACTGCTGAATGTTTGACGTTAGATTTTGGACCTTTTGAAACGGTTCATCGTTGGCAGCGTATGCCTGAGTGTGATGAATTTGTTGGAGCTAGGCGCAGCAAGCATACAGTAGCTGCCTACAAGGATGCAATCTATGTATTTGGTGGTGACAATGGTAAAAGAATGTTGAACGATTTGCTGCGGTTTGATGTAAAAGAAAAATCATGGGGACGGGCTGTTGTAACTGGAAGTCCTCCAGCTCCAAGGTACCATCACTCGGCGGTTGTTCATGACTCATCAATGTTCGTATTCGGTGGATACACCGGTGACATTCACTCAAACTCTAACTTGACAAATAAAAATGACTTGTTTGAGTATAAATTCCAAACAGGCCAGTGGACGGAGTGGAAATTTATTGGTAAAACTCCAGTAGCAAGATCAGCACACGGCGCGGCTGTTTATGACAATAAGTTGTGGATATTCGCTGGATACGACGGAAATGCTCGGCTTAATGACATGTGGACAATATCACTGTTACCTGGAGAACTAAGAATTTGGGAACCGGTTGTACAGTCTGGTGATTATCCGCCTACATGCTGTAATTTTCCCGTTGCAGTAGCACGAGAATCAATGTTTGTATTCAGCGGACAGAGTGGCGCTAAAATAACAAACAGTCTGTTTCAATTTCATTTTAGAGACAGACGGTGGACTCGTATATCTACTGAGCATATATTACGTGGAGCACCACCACCACCTGCAAGACGTTACGGCCACACAATGGTAAGTTTTGATCGTCATTTGTATGTATTTGGTGGTGCTGCTGATTCGACATTGCCTAATGACCTTCATTGTTATGATTTGGACACACAAACTTGGAGTATTGTAATTCCCTCGAGCGACAGCGAAATTCCATCTGGGAGATTGTTTCACGCTGCGGCTGTTATTGGTGAAGCTATGTTTATATTTGGAGGCACTGTTGACAATAATGTACGCTCTGGTGAGACTTACCGCTTTCAATTTTCATCTTATCCTAAGTGCACTCTACACGATGACTTTGGAAGACTGTTAAGTTCCAGGCAATTTTGTGATGTTGAATTTGTAGTTGGGAAAGACACTATGGAGAAGAAAATACCGGCCCACATTGCCATGGTAGCTGCAAGATCCCAATTTTTAAGTTTAAAAATTCGTGAAGCGAGAAAAAAATTAGCTGCTGCAGCTGCCGCTGCTAAAATTGCTGAACAAGATAAAGATAAAGAAGACAAAAAAAATACGGGGGCTAAAGAATTATCATCATCTTCGTCAGTAGCTTCATTATTGGAAGTAAGACTTGAAGATGCGGTGCCAGAAGCCTTTGAAATGGTTCTAAACTATATTTACACTGATCGTATCGACCCGACAAAGAGTATTAGAGATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATGGATGTTTACAGACTCGCATTTGAGTTCAATATGACGAGATTGGAACAGTTGTGTGTTCATTATCTTGAAGCTACTGTCAATCATACTAATGTTTTAGAGGCACTACATAATGCTGCTCATCTTAAATTGTATTTTATTAAGGAATTTTGTTTGAGTTTTGTTGTCAAGGACAGCAATTATAATCAAATTGTTATGAGTCACGAATTCGAGACACTAGATCAACCACTGATGGTAGAAATAATTCGCCGTAGACAAATTCCGCAAACAACGCGGATTTATTCAAAGCAATACGAGCTGGGTACTGGTACAACGTTGGAACAGGATATGGAAAAATTTTTAAAAAACGGTAAAGAATTTTGTGACATAACTTTGATGCTACGTGGTGATCCTTATTCAGCTCACAAAGCTATTTTAGCGGCGCGTTGCAGCTATTTCGAAGGAATGTTCCGTTCTTTCATGCCTAAAAATAACACTGTTAACATACAAATTGGTGAAATGATACCGTCGACAGAATCATTTGTATCGTTAATGAGATATATTTACTACGCTGATGTCTCGATGCCGCCAGAAGATTCTCTTTATCTTTTTACTGCTCCAGTATTTTATGGATTTACTAATAATCGGTTGCAGGCATTTTGTAAACAAAATTTAGAAATGAATGTCACTGTAGACAACGTTATACCCATATTAGAAGCTGCTGATAGAATGCAAGCTAGTGATATGAAAAAATATGCTCTCAATATTATAGTTCATAATTTTAGTAAGGTCGCGCGATTACCACGAGTTCGGCAGATAAGCCGTGAATTACTTCTTGACATCTTTGATGCGCTGGCTGACGAACGAAGTGAAGCTCGAACTTGTCAAGATATCATGCAGTCAAGTGATTGCTGA
Protein Sequence
MMDNNMTAECLTLDFGPFETVHRWQRMPECDEFVGARRSKHTVAAYKDAIYVFGGDNGKRMLNDLLRFDVKEKSWGRAVVTGSPPAPRYHHSAVVHDSSMFVFGGYTGDIHSNSNLTNKNDLFEYKFQTGQWTEWKFIGKTPVARSAHGAAVYDNKLWIFAGYDGNARLNDMWTISLLPGELRIWEPVVQSGDYPPTCCNFPVAVARESMFVFSGQSGAKITNSLFQFHFRDRRWTRISTEHILRGAPPPPARRYGHTMVSFDRHLYVFGGAADSTLPNDLHCYDLDTQTWSIVIPSSDSEIPSGRLFHAAAVIGEAMFIFGGTVDNNVRSGETYRFQFSSYPKCTLHDDFGRLLSSRQFCDVEFVVGKDTMEKKIPAHIAMVAARSQFLSLKIREARKKLAAAAAAAKIAEQDKDKEDKKNTGAKELSSSSSVASLLEVRLEDAVPEAFEMVLNYIYTDRIDPTKSIRDQXXXXXXXXXXXXXXXXXXXMMDVYRLAFEFNMTRLEQLCVHYLEATVNHTNVLEALHNAAHLKLYFIKEFCLSFVVKDSNYNQIVMSHEFETLDQPLMVEIIRRRQIPQTTRIYSKQYELGTGTTLEQDMEKFLKNGKEFCDITLMLRGDPYSAHKAILAARCSYFEGMFRSFMPKNNTVNIQIGEMIPSTESFVSLMRYIYYADVSMPPEDSLYLFTAPVFYGFTNNRLQAFCKQNLEMNVTVDNVIPILEAADRMQASDMKKYALNIIVHNFSKVARLPRVRQISRELLLDIFDALADERSEARTCQDIMQSSDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00087267;
90% Identity
iTF_01006271;
80% Identity
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