Ccon016439.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- Lrrfip2
- Assembly
- None
- Location
- contig:20584567-20586893[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-109 8.9e-105 351.0 36.0 3 300 31 327 28 327 0.96 2 2 0.018 5.3e+02 0.4 5.7 193 238 357 401 339 402 0.61
Sequence Information
- Coding Sequence
- ATGGAGTCAGCAATAACTGGTCGAAGGCGTGCTGCTAGTCGGCACTCTGCTGAGGATCAAGCTCTCGATCAAATAGCAAAAGAGGCTGGAGAAAGATTAGCAGCACGAAGACAAGCCAGGGCCGAAGCACGAGAAATCCGAATGAGAGAGTTAGAAAAACAGCAAAAAGAAGCTGAACAAACCGCTGATCGTGTTTACGATATGTGTAATGCTGACGGAACAAGAACTTTGAGGGTAACACCAGATCCTATAAGGGCTTCACGCTTATTAACAAATTCAAATAATTTTCAGTCAAGTCGTAGGTCTTCCGAAGATTCCTTAGAGGATGCTGGTCAAAGTAGAGATTTAAGATTAGAGCTTAAAGAGCTTGAAGAAAAATTTAGAAAAGCAATGATTGCTAATGCTCAACTGGATAATGAAAAATCGTCATACGTTTATCAAGTGGATTTACTTAAAGATCAATTAGAAGAATCGGAAGAATCCGCCGCTACATTGCGACGAGAGCTCAGGGAAAAAACTAGTGAGGCTAAATTATTGCAACGTGATTGCCAACGGTTGAAAGAGGATTTTGAAATGTGTAAAACATTACTGGAGGAACGAGATAGGCTTATAGAAGAAAATGGATTGGTAATAATTGAAGATGAGGTCAGTGATGACGAAGAAGCAGAATCAACTAATGGATTTGTGAATCGTAAAAAAAAAGTACTAGTCAGTACGGAAGCTGCTGAATTGTTACAAAATGCTGGTGAAGGATCTCTAGATGTTCGGTTGAAAAAGTTTGGTGCAGAGAAAAAAGAATTACAAGATGAAATCCGACATCTAAGACTAGAATTGGAAGAAGCCAAGAGTCGATTAAGATCTGAAAGATCGTCTGGATCAGTATTAGGATTTTCAGACTCAGAAGACGTCCAAAGGGAAGCAAATAAATTGTTGGCAGATTACAAATTCAAATTACAAAAAGCCGAACAAGATATGTCGACGTTACAAGCAACTGTCGCGAGATTAGAGAGTCAAGTGATTCGTTACAAGTCAGCGGCCGAAACTTCTGAGAAAGCCGAAGACGACTTGAAGGTTGAGAAGCGGAAATTACAGAGAGAAGTAAGAGAATCACAGAGTCGTGTTGAAGAATTAGAAACAACAAATTCACATTTACAAAGACGATTAGATAAATTGATAAAAGCAAAATCGGCTCTTTTGAAAGAGCTCTGA
- Protein Sequence
- MESAITGRRRAASRHSAEDQALDQIAKEAGERLAARRQARAEAREIRMRELEKQQKEAEQTADRVYDMCNADGTRTLRVTPDPIRASRLLTNSNNFQSSRRSSEDSLEDAGQSRDLRLELKELEEKFRKAMIANAQLDNEKSSYVYQVDLLKDQLEESEESAATLRRELREKTSEAKLLQRDCQRLKEDFEMCKTLLEERDRLIEENGLVIIEDEVSDDEEAESTNGFVNRKKKVLVSTEAAELLQNAGEGSLDVRLKKFGAEKKELQDEIRHLRLELEEAKSRLRSERSSGSVLGFSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAETSEKAEDDLKVEKRKLQREVRESQSRVEELETTNSHLQRRLDKLIKAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01003522;
- 80% Identity
- -