Ccon023215.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia congregata
Gene Symbol
PAXBP1
Assembly
None
Location
contig:19420408-19429653[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2e-30 3e-26 93.3 1.7 2 272 542 750 541 752 0.95

Sequence Information

Coding Sequence
ATGTCGTTATTTAATAAGCCGAAGAGAAATATTCGTCGGCGATCTTTCAATGAAGAGTATGAAGACAATGAGAACAGAATGGAGTGTGATGATGTCCAACCTGTGGTTAAATCTAAGCCCAAGAAGAAGGAAAAACCCAAACAAACGCTCCTGAGTTTCGGAGAGGAGCTCGATGAAGCTGATGATGGGGAGGTTTTTAAGGTGAAGAAGTCATCGAGGAGCAAAAAACTGATGAAACAACTTGATCACGAAAGGAGAAAAAAGAAAGGTGAAGAGAAAATGCAAGTGGACTCTGAGCAAGCAAACGTGTCTATTAAATGCGACAATGATTTAGAAATAAAGACAGATGATCTAGTAGTTAAAATTAAAAATTCTGCACCACTAATTCTAAATGGACGAGCTGCACTAGTGGCTGGAAAAGACGATTATTCTTCGGATGAAGAAGATGATTCAGCGGCGCACAAATTTAGAAAAAATTTTACCAAAACTGACCCCATGAAATTATTTTTAGAAAGTGGATGTATTCCTGACGCTGCTATGATACACGCTGCTAGAAAAAAACGACAAAAAGCTAGAGAATTAGGAACTGATTTTATACCTGTCGAAGAAGTACAAACTGAAGAAAAAGGAAAGTCAAGGCTGATACGCGAAGAAGATCATGATCGTAGTGACGATGATGAGTCGCACGAGCGAATGGATATGACAGTTAACATTGAAGCTCGTGATAAAGAGAAGCGAAGAGAAGCATTTTTAGCATCACAAGTTCCCATAAAACTGTCCGACGACGAGAGCGAGCATGGTAATGAAGAAGAAGAGTGGGAAGCTCAACAAATACGTAAAGGAGTTACTGGCGCTCAAATCGCAGCTGCTCAACAGGATTCTCTCATGCAACAACAGTATTCAATGGGTCTAAATAATCAATATGTAACAGGTACAGGAGTGCATTTAGAAATGGGTACGATGCCAGTAGCTCCTCCACCACCATGTATTCAACCACCAGATCCTGAAAAAATGGTTCCTGTGTCTCCTGAAGAAATTGCTGAAAAAATACGCTCAAGGGTCTCGAGTTTACGTCAAGTACGTCGTAAACATCAGCAGGACCAAATGCAATTGAAAGAAGAACTGCTGCAGTCGTTGAAGGAATTAGAAGAGGGTGATATTCGTGCGCCTCAGCTAGCTCAACGCTTCAAATATTACCAAGAGTTACGTGGGTATGTCACTGACTTGGTAGAGTGTCTTGATGAGAAGCTGCCAATGGTGACAGGATTGGAACAACGTTGGCTGAACTTGTACGGCGAACGTTCTACTGATCTTATGGAACGACGTCGTCAGGATACACGCGATCAAACAGAAGAAATCACGTCTGCTTCAAGAGGGCAAGCTATAAGGCGAGGTCCAGAAGATGATGCGCGCATTCGGCGAGCGACAGAACGCGAAGGTCGACGAGCACGACGGCGAAGAGCTCGTGAGCTGATGCAAAATGTTCCTAAGCACAATGACGGTATGTCAAGTGATGACGAAGTTACTGAGCAACAAAATCTAGCTTTTAAGCAGGCGAAAGAGGAAATTGATGAAGAGAGTAGAGATATTTTTTCTGATGTCATGGATGATTTTTGCACCGTCCGAGGTATTTTAGCTAAGCTAGAATCCTGGAGAGAAATAGACATGGAGGCTTACACAGAGGCTTATGTTTCATTATGTATTCCTAAAATAATTTCACCGATAGTAAGATTACAACTTATCACATGGAATCCATTAATGGAAAGTACTGATCTAGAACGTACCAAGTGGTATAATGGATTACTATTATACGGATTAGATCAAAAAGAAACAGAAGAATCACTCAGGCGTGATCCTGATGTGAGATTAATACCACTCGCTATTGAAAAAATAGTAATTCCTAAACTAACTTCCATTGTGGAAAAAATATGGGACCCAATGTCTACATCACAGACTCTGCGGCTTGTTGGTACCGTCCGTCGTCTTATCATCGACTATCCTAATCTCAATGAGAAAAGTAAACAGCTTCAGCTGCTTTTCACCGCTATCTTAGAGAAAATAAAAGCTGCCATTGATAATGATGTATTTATGCCTATTTTCCCAAAAATTTTCGATCCAAAGCATCCATTTTTCCAACGGCAATTCACTATGGCAGTAAAATTATTACGGAATATTTTAAGTTGGCAAGGATTGCTTGGAGATAATCAATTGAAATCTTTAGCAATTACTTCACTACTTAACCGATATTTAATAGCAGGCTTAAGATTTTCTCTTCCGGTAGACGCACTGCATAAAGCTAATATGATTATGACAACAATACCACGAGCGTGGCTTCATGGAAGTGCTGTTCAAGATTTAAATATGTTTGCGACTCTTATTAATCAACTGAGTGATAGTCTAGATCAAGCAAATCCAGCTCATCACGAGGCGTGGGAGTACTCTCAATCAATTTTACGGTCCATAAAATCATTATAA
Protein Sequence
MSLFNKPKRNIRRRSFNEEYEDNENRMECDDVQPVVKSKPKKKEKPKQTLLSFGEELDEADDGEVFKVKKSSRSKKLMKQLDHERRKKKGEEKMQVDSEQANVSIKCDNDLEIKTDDLVVKIKNSAPLILNGRAALVAGKDDYSSDEEDDSAAHKFRKNFTKTDPMKLFLESGCIPDAAMIHAARKKRQKARELGTDFIPVEEVQTEEKGKSRLIREEDHDRSDDDESHERMDMTVNIEARDKEKRREAFLASQVPIKLSDDESEHGNEEEEWEAQQIRKGVTGAQIAAAQQDSLMQQQYSMGLNNQYVTGTGVHLEMGTMPVAPPPPCIQPPDPEKMVPVSPEEIAEKIRSRVSSLRQVRRKHQQDQMQLKEELLQSLKELEEGDIRAPQLAQRFKYYQELRGYVTDLVECLDEKLPMVTGLEQRWLNLYGERSTDLMERRRQDTRDQTEEITSASRGQAIRRGPEDDARIRRATEREGRRARRRRARELMQNVPKHNDGMSSDDEVTEQQNLAFKQAKEEIDEESRDIFSDVMDDFCTVRGILAKLESWREIDMEAYTEAYVSLCIPKIISPIVRLQLITWNPLMESTDLERTKWYNGLLLYGLDQKETEESLRRDPDVRLIPLAIEKIVIPKLTSIVEKIWDPMSTSQTLRLVGTVRRLIIDYPNLNEKSKQLQLLFTAILEKIKAAIDNDVFMPIFPKIFDPKHPFFQRQFTMAVKLLRNILSWQGLLGDNQLKSLAITSLLNRYLIAGLRFSLPVDALHKANMIMTTIPRAWLHGSAVQDLNMFATLINQLSDSLDQANPAHHEAWEYSQSILRSIKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00996340;
90% Identity
iTF_01003521; iTF_01006062; iTF_01004244; iTF_01005081; iTF_00378016; iTF_00381834; iTF_00379614;
80% Identity
-