Ccon002177.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:2840933-2843313[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-07 0.00014 22.2 0.0 2 43 209 250 208 252 0.92 2 4 8.9e-12 9.4e-09 35.5 0.1 3 44 260 301 259 302 0.86 3 4 0.28 3e+02 1.9 0.0 21 33 329 341 315 346 0.71 4 4 2.5e-12 2.6e-09 37.3 0.1 4 39 373 408 372 413 0.93
Sequence Information
- Coding Sequence
- ATGACTGAGATTGTTGATCAGACCGATAACAATATCGGAGAATACAATGTTTTCACGTGGATCACTTACAAAGATGATATACCAAGATTTATGTACCAATTATTCAATAATGAATCACTTGTTGACGTGACGCTCTGTGTTGATGGTGAACGGATTCAAGCTCACCGTCTCATCCTCGGTGCTTGCAGTGATTTATTAAGAGATGTGTTGAAAGAAGCTCCTGAGGACAATCCGACTCTCATAATTAATGACGTTTCAGCCGAAACTATGAAAGCAATAATTGAATTTTGTTATACCGGGAATGTAAAAGTTCCTCCGGCAGGGACCAGAAATTTATTTGAAGCTGCTAGGTTTTTAAAAATATCAGCACTGATGGAGTTTCAGACAGCAGAGTCTGATTTTACAAATGAAGATGAATATCAATTAATAGATTCTTTGGATGCGTCTAATGAAGTCGTAGAAAATACTTGGGAAATTGAAAATGAAAATTATGAAGCTGAAGATGTTACATATACTGAAGAAGTAGATATGAGTACTGTTAAAGAAGAACAAGTTAAACCAGAGAAAGAAAAAGGTAATAACAAGACAAAACGCAAACGTGAGAACCCCAAAAGAGATTACAATCCTGCGAACATGGAAGCTGCACTGAATGACTTGAGCCAAGGGTTGTCTTTAGTTGAGGCTTCTACCAAAAACAATGTGGCCAGATCGACACTCTACATGAGGTGCAAAGCTCTAGGAATGCAACTGAACACCTCCAGACACGATTATCCTGCAGACCGACTCAAGGCGGCTATCAATGCTGTTATGAACGGAGCCAGTTTTCAAAGTGCATCTGATAGATACAAAATACCTAAAACTGTCTTGTGGAGGCGAATCCAAAAAGAAAATTATCGCTCGATGAGGCCTGATTGCAAGCGGGCTTACGATGCTCGCAAAAGAGAAGCTGCTGTTAAAGCTTTGGCTAGAGGGGAAAATCTTACTAAAGTTTCTTTGGAGTTTCAGATTCCAAAAACGACATTGTTTCGTGATAAGACAAAATTAGTGGACCAAGGAAAATTACCAGAATCATTTTGGAAAAAACGTAAAACAGAAGACGAGCATATAAAAAAAATGCGCCTTGAAGAGGCAGTTACCGCTTGCTTGCAAGGAAAAATGTCTCAAGCAGCTGCTTCAGTGGCTTATCATATTCCAAAAACCACAATTTGGCGACGGCTTCAACAGGAACAGAGAAAAATGGACAAAAACTTTGTCACTAAAAGAAGAGTCCGTTCTATTCAACAGGCAGATGTTAAAGTTGAGAGTTTAAAAGATTCTGACCTTACGATGTGTAATGACTCTTCGGATATTCCAATGACGTACATCGATGAAAATAACGTCGAAGAGTCTATTATAATTCTAACTAAGGAAGAAGTTGAAGGCCTTAATCTCGATGATAGTCAACAAATTATTGTCAGCACGGATAATGATGGGGAGTACATTCCTTGTTCGATAAACATCGAAGATACGTCTAACTATTCGGCTATTGAAAGTTAA
- Protein Sequence
- MTEIVDQTDNNIGEYNVFTWITYKDDIPRFMYQLFNNESLVDVTLCVDGERIQAHRLILGACSDLLRDVLKEAPEDNPTLIINDVSAETMKAIIEFCYTGNVKVPPAGTRNLFEAARFLKISALMEFQTAESDFTNEDEYQLIDSLDASNEVVENTWEIENENYEAEDVTYTEEVDMSTVKEEQVKPEKEKGNNKTKRKRENPKRDYNPANMEAALNDLSQGLSLVEASTKNNVARSTLYMRCKALGMQLNTSRHDYPADRLKAAINAVMNGASFQSASDRYKIPKTVLWRRIQKENYRSMRPDCKRAYDARKREAAVKALARGENLTKVSLEFQIPKTTLFRDKTKLVDQGKLPESFWKKRKTEDEHIKKMRLEEAVTACLQGKMSQAAASVAYHIPKTTIWRRLQQEQRKMDKNFVTKRRVRSIQQADVKVESLKDSDLTMCNDSSDIPMTYIDENNVEESIIILTKEEVEGLNLDDSQQIIVSTDNDGEYIPCSINIEDTSNYSAIES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379534;
- 90% Identity
- iTF_00380476;
- 80% Identity
- iTF_00378984;