Cchi000672.1
Basic Information
- Insect
- Cotesia chilonis
- Gene Symbol
- Hr39
- Assembly
- None
- Location
- scaffold1:7830922-7834120[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.77 5.4e+03 -3.9 6.6 134 163 171 200 59 313 0.55 2 4 2.8e-08 0.0002 20.6 0.0 1 21 388 408 388 412 0.92 3 4 0.014 98 1.8 0.0 91 153 444 505 422 514 0.57 4 4 1.8e-71 1.2e-67 228.7 0.5 187 408 498 710 485 710 0.93
Sequence Information
- Coding Sequence
- ATGATAAATTACAAATTTAAGATTAACCAAAAAAATTCTAATTTAAATTTCTTCGTAAAATACCTAACCGGGCAGAACGGCGTGACAGTGTCAGTAGTATCTTCCTGCAGCAGCTCGAGCCCCCTGGAGGCCTCGATCGACGACGGGGACAGTGACGGGGAGGTCAGCAAGATCGACTTCCGCGGGGTAAATCTTCGGACGAAAAAAAAGCGCGATGAGTCAGAGTGTCCGAGCGTGGAGTCCCACCAGCAGCCGGAGCGACCGATGTCCTGGGAGGGCGAGCTCTCCGACCAAGAAATGTCTTCCAATACCCTGACGAACCCCGAGGAGACCTCCATGGAAGGGGTCCAGGTCTGCGGCGCTAGTCCAGGTCCTCAGGAGCAAAAGTTCCCCATAAAGCCCGAGCCAGACTTCAGGTCCAGCCCCGTGGGGAAACTCCTCGGCGGATACTCCTCCACGCCCAACCACAGTCCAGTTTTGAACCCGCGACACCACCTCACCAAGCACAGTCACACCAGGTCCCAAGTTCCGTCCCCAGACTCTGCTATTCATTCTGCCTACAGCGTCTTCAGCTCTCCGACTCAGAGTCCTCATGCGGCACGACACTCGGCCCTTGGAGCAGGCAGTCCCGTTCCTTCTTCCTCGTTGTCGCTGTCCAGACACAGCTTCAACAATTCTACGTCTTCGCTGTCGTTGTCCTTGTCACACTCGCTGTCCAGGAACAACTCCGACGCTTCCAGCAGCTGCTACAGTTATGGGTCCCTGAGTCCTCCCACGCATTCTCCTGTACCTCAAGGAAGTCCGCTCCACCTAGCATCAAGCGCCCACCACTCAAACTACTCGAACATCTCAGAACTGGGTTCAGAAACCCACTCAGAAGTCGAGCAGGAGGACTGCAAAATCCCTTCAGCACCCGCAGGAATTTCCACAAGGCAGCAGCTGATCAACAGCCCATGCCCGATTTGCGGGGACAAGATCAGCGGGTTTCACTACGGGATTTTTTCCTGCGAGTCTTGCAAAGGATTCTTCAAGCGAACCGTGCAAAACAGGAAGAACTACGTCTGTCTCAGAGGCGCAGGTTGTCCGGTAACAGTTGCCACCAGGAAGAAGTGTCCAGCTTGCAGGTTCGACAAGTGTCTGAACATGGGCATGAAGCTAGAAGCGATTCGAGAGGACAGAACTCGCGGTGGCAGAAGCACTTACCAGTGTACGTACACTTTACCCGCTAATTTGATCGGCGCAGTTCCTGGTGACAACAAGATTACTGGCGGGAGTTGCGGCAGTCCGGCGCCTTCTGAGCACCATCATTCCACTCGGCACCACTGGAACCACTCCCACAAGATCCAGGTAGTGCCTCAGCTGCTCCAGGATATCATGGACGTCGAGCATCTCTGGCACTACAACGACAACGACAGAGTTAGTCAGGCTGCCAACGGAGCTAATCCTGACTCGTGCGCAAGCTCCGTGGGACCGACGAATCACGAGCAGCTGAGCTCGTCGAGCAACGAAAATTCATCACCTGGTACAGAGAGCCAGCACCCGGACCCTCTGTCAAACCTGTGCAATATAGCGGACCATCGACTGTATAAAATAGTTAAATGGTGCAAAAGTCTTCCGTTGTTTAAGAATATTTCGATCGACGACCAGATCTGCCTGCTGATAAATTCCTGGTGCGAACTACTGCTATTCTCATGCTGCTTTAGAAGCATGAGTACCCCGGGGGAGATCCGGGTGTCGCTCGGGAAATCGATCACCCTGGAGCAAGCCCGACAATTGGGGTTGGCGACCTGCATCGAGAGAATGCTGGCATTCACCAACAATCTCAGGAGATTGCGTGTCGATCAATATGAGTACGTCGCGATGAAGGTGATTGTCCTACTTACGTCAGACACCAGCGAGCTCAAGGAGCCGGAAAAGGTGAGAGCGTCTCAGGAAAAGGCGCTACAAGCCCTTCAGCAGTACACTATTGCGAGGTATCCTGAGATGCCGGCTAAGTTTGGGGAGTTACTGCTGAGGATACCGGATCTCCAGAGGACCTGCCAGGTTGGCAAGGAACTGCTTAGTCAGAAACGCGCTGAGGGAGAGGACAGCTCATTCAATTTACTTATGGAACTGCTACGTGGAGATCATTGA
- Protein Sequence
- MINYKFKINQKNSNLNFFVKYLTGQNGVTVSVVSSCSSSSPLEASIDDGDSDGEVSKIDFRGVNLRTKKKRDESECPSVESHQQPERPMSWEGELSDQEMSSNTLTNPEETSMEGVQVCGASPGPQEQKFPIKPEPDFRSSPVGKLLGGYSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVPQGSPLHLASSAHHSNYSNISELGSETHSEVEQEDCKIPSAPAGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLIGAVPGDNKITGGSCGSPAPSEHHHSTRHHWNHSHKIQVVPQLLQDIMDVEHLWHYNDNDRVSQAANGANPDSCASSVGPTNHEQLSSSSNENSSPGTESQHPDPLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQVGKELLSQKRAEGEDSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380386;
- 90% Identity
- iTF_00378090;
- 80% Identity
- iTF_00378090;